Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00587 ATGGGAAAGTCAAGCAAGAAATCAGCCACCAAAGTTGACGCTGCTCCCGCTGTGGTTCCAACATCGAAATCTGCCAAAAAGGGCAAGAGGCAGGCTGATGAGCTTGAGAAGCAAGTGAGTGCAAAGAAGCAGAAGGTAGAAGAGGTTGCTCAGAAGCAAAAGAAGGAAGCAAAGAAACCAGCAGCAAAAGTTGTTGTTCCTTCAAAAAAGGCACCTGCTAAAAATGGCGCTCTTACCCAAGCAAAGAAAGGCAAGCCAGCTCCCAGCTCCAGTTCTTCTGAATCTTCTGAAGATGACTCCTCTGATGAGGATGAAGTGAATGCAAAGAAACAAAAGAAAGAAGTGGTTGCTGAGAAGCAAAAGAAGGAAGCAAAGGTGCAAAAGAATAAGAAGGAAAGTAGTTCAGATGATTCTTCAGAATCTGAAGATGAGAAACCTGCGGCAAAAGCTTCTGTTCCATCAAAAAATCAACCTGCTAAAAATGGCACTCTGAGTACTCCAGCAAAGAAAGCAAAGCCAGCTAGCAGTTCCAGTTCTTCTGAATCCTCTGATGATGATTCCTCTGATGAAGATGAAGCTCCAAAACCGAAGGTGGTACCTTCTGCAGCAGGTAAGAATGGACCTGCTTCTACAAAGAAAATCCAGCAAAGTGAAACCTCAGAGTCTGATTCTGATAGCAGCTCTGATGAGGACAATGTAACTAAACCATCTAAGAAGCCTGCTGCTGCTGGTCTTGGTAAGAATGTGCCTGCCAAGAAGGTTGATTCAGACTCATCCTCTGATAGTAGTTCTGATGATGAGGATGATAATAAGAAGAAACCAGCAGCTACTGTGTCCAAAAAGCTGCCTGCATCTGCAGTTGCTCCAAGTAAGAAAGTTGAGACAAGTGAAAGCTCAGACGATGAATCAAGTGACAGCTCTGATGATGACAAAGATACAAAGCCTACTGTAACAGCTGTGTCCAAGCCTTCTGCTGCTGCTAAAAAGAATGTTGACAGCTCAGATTCTGATGATGATAGCAGCTCTGATGAAGACAATAAGCCAACAAAAGTTTCTAATGGTAACAAGAAACAAGCAACAGTTGCGAAGGCAGCTAAAAAGGAGTCTAGCTCAGAGAGTGATTCATCAGATGATGAGGATAAGATGGATGTTGACGATGACGATAGTTCTGATGAAAGTGATGAAGAGCCACCGAAGAAAAAGCAGCCTGTGAAAGACTCAGAGGAAAGCAGTGATAGTTCTGATGACAGTGACGAGGAAGATGAGAAACCCTCTAAAACTCCTCAGAAAAAAGTTAAGGATGTGGAGATGGTTGATGCTGCCTCGGCTGGAAAGAATGCTCCTAAAACCCCGGTTACACCAAAAGAACAAAATGGCACTTCAAAGACATTATTTGTTGGAAACTTGTCATATAGTGTGCAACGAGAAGATGTGGAAAATTTCTTCAAAGATTGTGGCGAGATTGCTGATGTCCGCCTAGCTACAGATGATGATGGGAGGTTTAAAGGCTTTGGACATGTAGAGTTTGCAACAGCAGAGGCAGCCCAAAATGCGCTTGAGTTAAATGGGCAAGAATTGTTGCAACGTGCTGTCCGGCTTGATTTAGCTCGGGAAAGGGGTGCTTATACCCCCACAAGCAACAACAACTGGAACAATTCATTCCAGAAGGGTGGAAGAGGCCAGTCTCAAACAGTATTTGTGAAAGGTTTTGATAGATCTCTTGGGGAAGATGAGATAAAATCTAGTCTGCAGGAGCATTTCGGTTCTTGTGGGGAAATCACAAGGATATCAGTTCCGAAAGATTATGATTCTGGTTCTGTTAAGGGGTTTGCTTACTTGGATTTCGGTGATGGTGATAGCTTGAATAAAGCACTAGAACTTCATGAAAGTGAACTTGGTGGTTATACCTTGTCAGTGGATGAAGCAAAACCTAGAGGTGATAATCAAGGTTCAGGTGGTAGAGGTGCAGGAGGAAGGAGTGGTGGCGGTAGATTTGGTGGAAGGAGTGGTGGTGGCAGAGGTCAATTTGGTGGAAGGGGTGGTGGTGGCAGAGGTGGTAGAGGAAGAGGTGGTGGTAGGGGTCGAGGAACACCTAATAGACCAAGTCTTGCTGCGGAAGGCACAGGGACAAAGACTACTTTTGCCGATGACGACTAG 2157 0.4446 MGKSSKKSATKVDAAPAVVPTSKSAKKGKRQADELEKQVSAKKQKVEEVAQKQKKEAKKPAAKVVVPSKKAPAKNGALTQAKKGKPAPSSSSSESSEDDSSDEDEVNAKKQKKEVVAEKQKKEAKVQKNKKESSSDDSSESEDEKPAAKASVPSKNQPAKNGTLSTPAKKAKPASSSSSSESSDDDSSDEDEAPKPKVVPSAAGKNGPASTKKIQQSETSESDSDSSSDEDNVTKPSKKPAAAGLGKNVPAKKVDSDSSSDSSSDDEDDNKKKPAATVSKKLPASAVAPSKKVETSESSDDESSDSSDDDKDTKPTVTAVSKPSAAAKKNVDSSDSDDDSSSDEDNKPTKVSNGNKKQATVAKAAKKESSSESDSSDDEDKMDVDDDDSSDESDEEPPKKKQPVKDSEESSDSSDDSDEEDEKPSKTPQKKVKDVEMVDAASAGKNAPKTPVTPKEQNGTSKTLFVGNLSYSVQREDVENFFKDCGEIADVRLATDDDGRFKGFGHVEFATAEAAQNALELNGQELLQRAVRLDLARERGAYTPTSNNNWNNSFQKGGRGQSQTVFVKGFDRSLGEDEIKSSLQEHFGSCGEITRISVPKDYDSGSVKGFAYLDFGDGDSLNKALELHESELGGYTLSVDEAKPRGDNQGSGGRGAGGRSGGGRFGGRSGGGRGQFGGRGGGGRGGRGRGGGRGRGTPNRPSLAAEGTGTKTTFADDD. 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00587 718 Gene3D - 543 662 IPR012677 -
Seca5g00587 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 531 IPR000504 GO:0003723
Seca5g00587 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 565 637 IPR000504 GO:0003723
Seca5g00587 718 SUPERFAMILY RNA-binding domain, RBD 452 560 IPR035979 GO:0003676
Seca5g00587 718 FunFam Nucleolin 2 548 697 - -
Seca5g00587 718 Coils Coil 112 132 - -
Seca5g00587 718 MobiDBLite consensus disorder prediction 1 460 - -
Seca5g00587 718 FunFam Nucleolin 2 436 546 - -
Seca5g00587 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 563 644 IPR000504 GO:0003723
Seca5g00587 718 CDD RRM2_NUCLs 564 642 IPR034350 -
Seca5g00587 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 538 IPR000504 GO:0003723
Seca5g00587 718 MobiDBLite consensus disorder prediction 375 393 - -
Seca5g00587 718 Gene3D - 452 542 IPR012677 -
Seca5g00587 718 MobiDBLite consensus disorder prediction 420 438 - -
Seca5g00587 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 109 608 - -
Seca5g00587 718 SMART rrm1_1 463 534 IPR000504 GO:0003723
Seca5g00587 718 SMART rrm1_1 564 640 IPR000504 GO:0003723
Seca5g00587 718 MobiDBLite consensus disorder prediction 208 222 - -
Seca5g00587 718 MobiDBLite consensus disorder prediction 103 149 - -
Seca5g00587 718 Coils Coil 25 56 - -
Seca5g00587 718 CDD RRM1_NUCLs 463 539 IPR034349 -
Seca5g00587 718 MobiDBLite consensus disorder prediction 26 63 - -
Seca5g00587 718 MobiDBLite consensus disorder prediction 154 182 - -
Seca5g00587 718 MobiDBLite consensus disorder prediction 394 410 - -
Seca5g00587 718 MobiDBLite consensus disorder prediction 636 718 - -
Seca5g00587 718 SUPERFAMILY RNA-binding domain, RBD 560 674 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00587 Seca-Chr5 13649380 13655706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00587 464 626 Eukaryotic Initiation Factors Gene Family AT4G34110 30.488 5.12e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00587 K11294 - gmx:100779929 538.495