Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00579 ATGGCTTATAGAATTTCAAGTATCACTAATTTTGTTGTCATCACGTTGGTGCAGTTAGGCACAATATGTAATGCACAATTGTCTTCTACGTTTTATGACAGTACATGCCCTAAGGCACTAAACACTATCAGAACTGTGATTGAGCGTCGCATGGCTGCGTCTCTCATTCGCCTTCACTTTCATGACTGCTTTGTTCAGGGTTGTGATGCATCAATATTGCTTGATGATAGCAGCACTATTGAGAGCGAAAAGAGTGCACTTCCAAATGTAAATTCAGTGAGGGGATATGAAGTCATTGATAAAGCAAAAGCTGAGGTTGAGAAACTATGCCCTGGCGTTGTCTCATGTGCTGACATCGTCGCAGTAGCAGCGCGTGATGCATCATTCGCTGTGGGTGGTCCATCATGGACGGTGAAGCTTGGACGGAGAGACTCCACCGCCGCAAGCAAAAGTTTAGCTAATAGTGACCTTCCATTATTTACGGATGATCTTGAAACTCTTATATCTCGTTTTGATAAGAAAGGACTCAGCGCCAGAGACATGGTTACTCTATCTGGTGCCCATACAATTGGGCAAGCCAGTGCTTCACATTTCGTGGTAGGATATATAACAATGCAAGTGACATTGATGCTGGATTTGCTAGAACCCGTCAACGTGGTTGTCCATCCTCCAGTAGCCCTGACAATAATAAGAAGCTGGCAGCACTAG 708 0.4435 MAYRISSITNFVVITLVQLGTICNAQLSSTFYDSTCPKALNTIRTVIERRMAASLIRLHFHDCFVQGCDASILLDDSSTIESEKSALPNVNSVRGYEVIDKAKAEVEKLCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRRDSTAASKSLANSDLPLFTDDLETLISRFDKKGLSARDMVTLSGAHTIGQASASHFVVGYITMQVTLMLDLLEPVNVVVHPPVALTIIRSWQH. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00579 235 Gene3D Peroxidase, domain 2 158 199 - -
Seca5g00579 235 Pfam Peroxidase 45 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 SUPERFAMILY Heme-dependent peroxidases 26 199 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 FunFam Peroxidase 30 168 - -
Seca5g00579 235 PANTHER PEROXIDASE 72-RELATED 24 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 Gene3D - 31 157 - -
Seca5g00579 235 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 ProSiteProfiles Plant heme peroxidase family profile. 26 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Seca5g00579 235 ProSitePatterns Peroxidases active site signature. 52 63 IPR019794 GO:0004601
Seca5g00579 235 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca5g00579 235 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00579 Seca-Chr5 13450291 13451647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00579 11 198 Peroxidase AT1G14550 64.615 9.87e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00579 K00430 - gmx:100811641 320.857