Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00571 ATGGAGGAGAAGGGCGAAATGACCGTGTGTAGTAGCTACATTGAAGCAGCTGAGAATCTTATTTCTATCAAGACCATATCCACGGAGAAACACTTCACCGTTTTGGATGAATTTGACATCAAGCGTCTTCAAGAGGCCGATATCAATCAGGTTTCGAATGTTCTTTTGATATCAAGGTTTGCTGCTTGCCTTTTGCTCCGTCATTGTGAGTGGAGTGTAACTAAAGTGCTCGAAGCATGGATTGAGAATGAAGAAAGAGTTCGCAATGCTGTAGGGTTGCTTAAACAACCCCAGGTAAATTTTTCCAGCTCAGAAATTTTCATGTGTGGGATCTGTTTCGAAACCCTTTGTGGTGATAAGATTAGGTCAGTAGGGTGTGGCCATCCATTTTGCATGATTTGTTGGATGAGCTATGTGGATACAAAGATTGATGAGGGTCCTTATAAGTGCTTGACACTTAGATGCCCCGAACCCTCTTGTGGTGCAGCTGTGGATGGAGACATGGTTCACAAACTTGCAAGTGAATCAAGTAAGAAAAGGTACGATCAATTTTTGTTCCGCTCTTATGTGGAAAATAATAAGAAGATTAAGTGGTGTCCTGCTCCTGCTTGTGGTTATGCTGTAAGTTTTGAAGGTGATGGTTATAGAAAAAATTTCGATGTTACATGTCTTTGTTATCATAGTTTTTGTTGGAGATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACTGCACATCAATGGATAAGAAAGAATAATTCTGAATCTGAGAATGAATATTGGCTTGTTGCTGATACTAAACCATGTCCTCAGTGCAAGAAACTTATTGAGAGAAACGCGGGGTGCACACACATCACGTGCATTTGTGGATTTCAATTTTGTTGGTTATGTCTCAGTGATTGGATTCGTTTTAGACATTGCAAATGCCATACTAATCAGTTTCAAGACACTAGCAAGATGGAAAAAGAAAGTAAGATGTCAATGGGTGATTTTGATAGGTACGTTTACTATTATGATCATTGGGCTAGAAATGATGTTTTAAGAAAAATTGTCATTGAGAATTTGATTTATCGTACACCTATAACAAGACTATGCCAGTTGTTCCAAAGGCCTGAAATTGACTTTAATTTTATAATTGAGGCTTGGAAACAAGTGATTGAATGTAGAGGAATGCTAAAATGGTGTCATATATATGGGTATTATCTCCCTGATAATATAAAGGTCAAGAAGGAATTTTTTGAGTACATCCAACATAAGGCTAAGGTTATTTTTGAAAAGCTTGATCGATGTGTAGGATTGGAACTGGGAGAGTATCTAAATGTTGAGCGAAAAGATGACTTTAATGGTTTTTGTTTGAAGCTAGTCAATTTGACTAATGTGACCAAGAACTATTTTGACAAGCTGGTGAAAGCGTTAGAGGATGGCCTAGTTGATGTGTACGTGAATAACAACACGAGGATGAAAAGAAAACCAAGTGAGATAGGTAACACCTCAAATCGAAGGGGAACCAGGAGAATAATTACCATTGATGGGCTGGCCAATGATGATCTATGGCAATGTGAGGCATGTGGTCATTACAATTCTGCCTCTTCTCCCATGTGTCAGGATACTAATTGCAGACAATACTTTAATTAG 1638 0.3871 MEEKGEMTVCSSYIEAAENLISIKTISTEKHFTVLDEFDIKRLQEADINQVSNVLLISRFAACLLLRHCEWSVTKVLEAWIENEERVRNAVGLLKQPQVNFSSSEIFMCGICFETLCGDKIRSVGCGHPFCMICWMSYVDTKIDEGPYKCLTLRCPEPSCGAAVDGDMVHKLASESSKKRYDQFLFRSYVENNKKIKWCPAPACGYAVSFEGDGYRKNFDVTCLCYHSFCWRCGEEAHRPVDCETAHQWIRKNNSESENEYWLVADTKPCPQCKKLIERNAGCTHITCICGFQFCWLCLSDWIRFRHCKCHTNQFQDTSKMEKESKMSMGDFDRYVYYYDHWARNDVLRKIVIENLIYRTPITRLCQLFQRPEIDFNFIIEAWKQVIECRGMLKWCHIYGYYLPDNIKVKKEFFEYIQHKAKVIFEKLDRCVGLELGEYLNVERKDDFNGFCLKLVNLTNVTKNYFDKLVKALEDGLVDVYVNNNTRMKRKPSEIGNTSNRRGTRRIITIDGLANDDLWQCEACGHYNSASSPMCQDTNCRQYFN. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00571 545 SUPERFAMILY RING/U-box 262 315 - -
Seca5g00571 545 CDD BRcat_RBR_ANKIB1 187 252 - -
Seca5g00571 545 Pfam IBR domain, a half RING-finger domain 265 307 IPR002867 GO:0008270
Seca5g00571 545 Pfam IBR domain, a half RING-finger domain 179 243 IPR002867 GO:0008270
Seca5g00571 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 191 IPR013083 -
Seca5g00571 545 SUPERFAMILY RING/U-box 180 250 - -
Seca5g00571 545 Gene3D - 239 480 - -
Seca5g00571 545 ProSiteProfiles Zinc finger CCHC-type profile. 230 243 IPR001878 GO:0003676|GO:0008270
Seca5g00571 545 ProSiteProfiles Zinc finger RING-type profile. 109 156 IPR001841 -
Seca5g00571 545 FunFam RBR-type E3 ubiquitin transferase 103 193 - -
Seca5g00571 545 ProSiteProfiles TRIAD supradomain profile. 105 322 IPR044066 -
Seca5g00571 545 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 42 396 IPR031127 GO:0004842|GO:0016567
Seca5g00571 545 SUPERFAMILY RING/U-box 103 191 - -
Seca5g00571 545 SMART ibrneu5 179 243 IPR002867 GO:0008270
Seca5g00571 545 SMART ibrneu5 251 310 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00571 Seca-Chr5 13021154 13022791 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00571 29 536 ARIADNE family AT1G65430 45.315 5.53e-158 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00571 K11968 - gmx:100801350 525.398