LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g00570	ATGTCTGAAGAAAACAAGTGTAGATATGACGTTTTCCTAAGTTTTAGGGGTGAAGACACGCGTCACACTTTCACTGGTCATCTCTACGATGCTTTGTGTCGAAAGCGAATCAACACCTTCATCGACGATGAGCAACTCAGGGCTGGAGATCAAATTGCGCCTGCTCTACTTCAAGCCATTCAAGAATCCAAGATTTCTATTGTCATTTTCTCAGAAAATTATGCAAATTCCACGTGGTGTCTTAACGAACTTGTTAAGATCATGGAGTGTAAGGAGGAGAAAAATCAACTCGTTTGGCCAATCTTTTACAAAGTGGAACCCTCAGATGTGCGGCATCAGAGGAAGAGTATCGGAGAAGCAATGAAGCTTCATGAAGATAGGTTCGGAAACAACTCGGAGAAACTGCACAAATGGAGGACAACCTTGTTTGACCTATCCAACTTGAAAGGATATCATTTGAAAGACGGGTATGAGTTCAAGTTTATTCAAGAGCTTGTAAGCAAGGTCTTTGTTAAAGTATCACCTAAAGATTTAGATACCGGTGAGAAACCCATAGTTGGACTAGAGTCTCGTGTTGAAGAATTGAAGTCAATTCTAGAAATTGAGTCTCATGATGCCACTTGCTTTTTGGGGATTTGTGGAGCTGGTGGAATTGGGAAAACCACACTTGTCAAAGCTTTGTATAACTCCATTTACAACCAGTTTGAAGGTGCATGTTTTCTTTTCAATGTCAAAGAAACTTCAGGTCAATTTGAGGGCCAGAAACGTCTGCAACAAACGCTTCTATCAGAAATGCTTGAGGAAGGAAAAATCCACTTGGAATCTGAGAATGAAGGAATCAGAACAATAAAAAGAAGACTTGGCCGAAACAGAGTTCTTATAGTTCTCGATGATGTTGATGACATCAAACAGTTGGAAAATTTGGCAGGGGGATGTCATTGGTTTGGTTCTGGGAGCAGGATCATTATAACTACAAGAGATAAAAATTTGCTAGATGTTCATGAGGTTGAAAAGAGATATGAAATGAAGATGCTAAATGATCATGAATCTCTCCAGCTCTTTTGTCAAAATGCCTTCAAAATGAGCCATCCTAAACCAAACTATGAAGACCTTTCCTATCGTGCGATGCGTTATGCCAAAGGCCTTCCTTTAGCTTTAAAATTGATAGGCTCTAATTTGTTTGGTAAAGAATTGGAACAATGGAGGTCTGCTTTGGACAAATATGAGAAGAATCCACATAGAGATATTCAAAGTATTCTTAGAATAAGCTTTGATAGTTTGGAACCCAATGAAAAAGACATTTTCCTCGACATTGCATGCTTCTTCAAAGGGAAGAGATTGGAATATGTAAAAAGTATACTACATGCCTGTGAGTTCTATCCAGAAATCGGTATTAAAACACTGGTTGATAAATCTCTTGTAACTGTTGAAAACGGTTGCTTGAGGATGCATGACCTGATACAAGACATGGGTAGAGAGATTGTAAAGCAGGAAGCGCCAGGAGAAGTTGGTAAACGCAGCAGATTATGGCTTTATGAAGATGTTCTCCAAGTACTAACTCAAAATACAGGAAGTAAGGAAATTCAAGGAATAATGCTTGATCCCCCTAAAGTAGAAAGGATTCGTTGGATTCATCATACTACCTTTAGGAAGATGGAGAATCTTAGAATTCTCATTATTCGAAACACAATCTTTTCCTCTGGGCCAAGTTATTTGTCCAATCAATTAAGGGTGCTTGAATGGAGCCATTACCCTTCAAAGACTTTACCAAGAGGATTTTCTCCCGAGAAAATTGTGGTGTTCAATTTACCTAGGAGTTCTTTCAAACTGAAAATGCCATTTCAGAAATTTGAGCATTTGACTTACATGAATATCTCCTCTAATTCTGTCACTCAATTTCCTAATGTTTCCGGAGCAAAAAATCTGAGAGAATTGAGGCTTGACAAATGCCTGAAACTGGTTACTGTTGATGGATCAGTTGGATTTCTTCCTAACCTTGTTTACTTAAGGGCTTCAGAATGTCCTCAGCTCACACAATTTCTGCCAAGAATCTGTTTGCCCTCACTTGAATACCTTTCATTTAATTTCTGCAGAGGACTCACACACTTCCCAGACATTGTGGGAAAAATGGACAAGCCATTAAAGGTTAGTATGATAGATACTGCTATCACAGAGTTTCCAGAATCCATTGACAAACTCACTGGGCTTAACTATCTTGAGATGACAGTATGTAAGGGACTCCAAGATCTACCAAGTAGCTTATTTATATTGCCAAATTTTGTCACATTAAAAATTGGTGGATGTTCTCAACTTCATGAATCATTTAGAAAGTTCAAAGAAAGCCACTTAGCAGCACAGTGCCGCCCAAATTTAAGGACACTGCATTTCGGCTATGCTGATCTATCAGAGGAAGATATTGACGCAATTATTCACATTTTTCCAAACTTGGAAAACTTGAATGTATCGGGTAACAATTTTGTATCCCTCCCAGCTCACATTAAAGGATCTGTTTACCTGACAAGTCTTGATGTCAGTGGATGCAAGTTGCTTAAGGAAATTCCTCAATTGCCGTCAAGTGTTCGTAAAGTAGATGCAAGAAAGTGCGATTCCATAAGTCAGAACACGTCAAGGATGTTATGGTCTCAGGTTTGTGAACAAAGTTTATAA	2667	0.3877	MSEENKCRYDVFLSFRGEDTRHTFTGHLYDALCRKRINTFIDDEQLRAGDQIAPALLQAIQESKISIVIFSENYANSTWCLNELVKIMECKEEKNQLVWPIFYKVEPSDVRHQRKSIGEAMKLHEDRFGNNSEKLHKWRTTLFDLSNLKGYHLKDGYEFKFIQELVSKVFVKVSPKDLDTGEKPIVGLESRVEELKSILEIESHDATCFLGICGAGGIGKTTLVKALYNSIYNQFEGACFLFNVKETSGQFEGQKRLQQTLLSEMLEEGKIHLESENEGIRTIKRRLGRNRVLIVLDDVDDIKQLENLAGGCHWFGSGSRIIITTRDKNLLDVHEVEKRYEMKMLNDHESLQLFCQNAFKMSHPKPNYEDLSYRAMRYAKGLPLALKLIGSNLFGKELEQWRSALDKYEKNPHRDIQSILRISFDSLEPNEKDIFLDIACFFKGKRLEYVKSILHACEFYPEIGIKTLVDKSLVTVENGCLRMHDLIQDMGREIVKQEAPGEVGKRSRLWLYEDVLQVLTQNTGSKEIQGIMLDPPKVERIRWIHHTTFRKMENLRILIIRNTIFSSGPSYLSNQLRVLEWSHYPSKTLPRGFSPEKIVVFNLPRSSFKLKMPFQKFEHLTYMNISSNSVTQFPNVSGAKNLRELRLDKCLKLVTVDGSVGFLPNLVYLRASECPQLTQFLPRICLPSLEYLSFNFCRGLTHFPDIVGKMDKPLKVSMIDTAITEFPESIDKLTGLNYLEMTVCKGLQDLPSSLFILPNFVTLKIGGCSQLHESFRKFKESHLAAQCRPNLRTLHFGYADLSEEDIDAIIHIFPNLENLNVSGNNFVSLPAHIKGSVYLTSLDVSGCKLLKEIPQLPSSVRKVDARKCDSISQNTSRMLWSQVCEQSL.	889

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g00570	888	Pfam	TIR domain	9	177	IPR000157	GO:0007165
	Seca5g00570	888	SUPERFAMILY	Toll/Interleukin receptor TIR domain	4	151	IPR035897	-
	Seca5g00570	888	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	438	IPR027417	-
	Seca5g00570	888	Pfam	NB-ARC domain	189	425	IPR002182	GO:0043531
	Seca5g00570	888	Gene3D	-	344	428	IPR042197	-
	Seca5g00570	888	ProSiteProfiles	TIR domain profile.	7	173	IPR000157	GO:0007165
	Seca5g00570	888	SUPERFAMILY	L domain-like	540	872	-	-
	Seca5g00570	888	PRINTS	Disease resistance protein signature	286	300	-	-
	Seca5g00570	888	PRINTS	Disease resistance protein signature	379	393	-	-
	Seca5g00570	888	PRINTS	Disease resistance protein signature	731	747	-	-
	Seca5g00570	888	PRINTS	Disease resistance protein signature	209	224	-	-
	Seca5g00570	888	FunFam	Disease resistance protein (TIR-NBS-LRR class)	5	174	-	-
	Seca5g00570	888	SUPERFAMILY	"Winged helix" DNA-binding domain	415	519	IPR036390	-
	Seca5g00570	888	Gene3D	-	176	339	IPR027417	-
	Seca5g00570	888	Gene3D	-	6	175	IPR035897	-
	Seca5g00570	888	Gene3D	Ribonuclease Inhibitor	716	881	IPR032675	-
	Seca5g00570	888	Gene3D	Ribonuclease Inhibitor	539	715	IPR032675	-
	Seca5g00570	888	SMART	till_3	8	148	IPR000157	GO:0007165
	Seca5g00570	888	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	9	768	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g00570	Seca-Chr5	12912657	12917331	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g00570	9	803	WRKY Transcription Factor Family	AT4G12020	30.270	2.46e-95	327

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g00570	-		-	aip:107611979	1089.72