Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00568 ATGGTTCACAAACATGCAAGTGAATCTAGTATGAAAAGGTACGATCATTTTTTGTTCCGATCTTACATGGAAAACAATAAGAAGATTAAGTGGTGTCCTGCTCCTGCTTGTGGGTATGCTGTAAGTTTTGAAGCTGATGGTTATAGAAAAAATTTCTATGTTACATGCCTTTGTTATCATAGTTTTTGTTGGAGATGTGGGGAAGAAGCTCATAGGCCTGTGGATTGTGAAACTGCACACCAATGGATAACAAAGAATAAGTCTAAATCTGAGAATGCTGATTGGCTTGTTGCTCATACTAAACCATGTCCTCAGTGCAAGAAACCCATTGAGAGAGACGAGGGGTGCAAAAGAATGAGGTGCAATGATTTGCTTGCTTCTATATGTTGCAAATGTCATACAATTCAATTTCAAGATACTAGCAAAGAGGAACTAAAAAGTAAGATGTCAAGGGGTTATTTTAATAGGTACATTTACTATTATCATCATTGGGCTATAAATGATGTTTTAAGAAAAAATGTCATTGAAAATTTGATTTACCTTACACCTATAAAAAGATTGTGTAGGTTGTTTCAAAGGCCTTCAACTGATTTTAATTTTATAATTGAGGCTTGGAAACAAGTGATTGAATGTAGAAGGGTACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATGATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACGTAAGGCTGAGTGA 735 0.3497 MVHKHASESSMKRYDHFLFRSYMENNKKIKWCPAPACGYAVSFEADGYRKNFYVTCLCYHSFCWRCGEEAHRPVDCETAHQWITKNKSKSENADWLVAHTKPCPQCKKPIERDEGCKRMRCNDLLASICCKCHTIQFQDTSKEELKSKMSRGYFNRYIYYYHHWAINDVLRKNVIENLIYLTPIKRLCRLFQRPSTDFNFIIEAWKQVIECRRVLKWCYTYGYYLPDDIKVKKDFFEYIQRKAE. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00568 244 SUPERFAMILY RING/U-box 95 135 - -
Seca5g00568 244 ProSiteProfiles Zinc finger CCHC-type profile. 63 76 IPR001878 GO:0003676|GO:0008270
Seca5g00568 244 Pfam IBR domain, a half RING-finger domain 12 76 IPR002867 GO:0008270
Seca5g00568 244 SUPERFAMILY RING/U-box 13 83 - -
Seca5g00568 244 Gene3D - 72 244 - -
Seca5g00568 244 CDD BRcat_RBR_ANKIB1 20 85 - -
Seca5g00568 244 SMART ibrneu5 12 76 IPR002867 GO:0008270
Seca5g00568 244 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 12 218 IPR031127 GO:0004842|GO:0016567
Seca5g00568 244 ProSiteProfiles TRIAD supradomain profile. 1 153 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00568 Seca-Chr5 12809843 12810610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00568 1 244 C3H Transcription Factor Family AT2G31510 41.045 4.08e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00568 K11968 - gmx:100801350 270.781