Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00548 ATGGCTTTGTGTTATGTTATTTTCAATCTTCTTCTAATTCTTCTTATCTCTTCCACCAAAGAAGCTTTTGGTTCATATCTTAGCCAAGATGTATTAGCACAGCAAGAAGCTGACAGAGTATATAGATTACCAGGGCAACCTTCTGTGAAGTTCAATCAATATGCTGGCTATATCACTGTCAATCAAACTCATGGAAGAGCACTGTTCTATTGGTTCTTTGAATCCACTGAAAAACCTGAAGAAAAACCTCTTCTCCTTTGGCTCAATGGAGGCCCCGGTTGTTCCTCAATTGGTTATGGAGAAGCAGAGGAGCTAGGACCCTTCTTTCCCCAAAACAGCAGTGAACCAAAGCTGAAATTGAACCCTTATTCTTGGAACAGAGCTGCAAATCTTTTGTTTCTGGAATCCCCTGTTGGAGTGGGATTCTCCTACACCAACACCAGCAGTGATATAAATGAGCTTGGTGATACCATTACTGCTAAGGATTCACACAACTTTGTCATCAATTGGTTTAGGAGATTTCCACAATTCAGATCACACGAGTTCTACATTGCTGGTGAAAGCTATGCAGGGCACTATGTCCCACAACTTTCTGAGCTCATTTTCGATAATAATCACAATCCTTCCAAGGAAGACTACATTAACTTCAAAGGGATCATGATTGGAAATGCACTAATGGACGATGAAACAGATCAAAAGGGTATGATAGATTATGCGTGGGATCATGCTGTGATATCTGATGGATTGTACCATAACATCACAAGCACATGCGACTTCAGCCTTCCAAATCAAACAAATGAATGCAATGTGGAACTCAATAAGTACTTTGATGTGTATAAGATCATTGACATGTATAGCTTGTACGCTCCAAGGTGTTTCAGCAACAGTAGCAGCAGCAGAAAGGAAACCCCTGTTGTCAAAGGCGTAGCCCCTCATTCTTTTTCCAAATTTGATGGGTGGCATAAAAAACCAGCTGGGTATGATCCATGTGCATCGGATTATACAGAAGTGTACCTAAATAGGCCAGAAGTTCAAAAGGCACTCCATGCCAATGTCACTAAAATTCCCTATCCATGGACTCACTGCAGCGATAATATCACATTTTGGAATGACGCACCACATTCCACGCTTCCTGTCATCAAGAAGCTTATTGCCGGTGGAATTCGGATATGGGTTTACAGTGGAGATACCGATGGAAGAATTCCTGTGACTGCAACAAGATATACATTAAGAAAACTGGGGCTCAGTATTGTTGAAGATTGGACTCCCTGGTATACAAGCCGGCAGGTAAACCAAATTGTCTTAGAGTTTTCTATTTTATGCTCAACTATATATAATTAA 1341 0.4079 MALCYVIFNLLLILLISSTKEAFGSYLSQDVLAQQEADRVYRLPGQPSVKFNQYAGYITVNQTHGRALFYWFFESTEKPEEKPLLLWLNGGPGCSSIGYGEAEELGPFFPQNSSEPKLKLNPYSWNRAANLLFLESPVGVGFSYTNTSSDINELGDTITAKDSHNFVINWFRRFPQFRSHEFYIAGESYAGHYVPQLSELIFDNNHNPSKEDYINFKGIMIGNALMDDETDQKGMIDYAWDHAVISDGLYHNITSTCDFSLPNQTNECNVELNKYFDVYKIIDMYSLYAPRCFSNSSSSRKETPVVKGVAPHSFSKFDGWHKKPAGYDPCASDYTEVYLNRPEVQKALHANVTKIPYPWTHCSDNITFWNDAPHSTLPVIKKLIAGGIRIWVYSGDTDGRIPVTATRYTLRKLGLSIVEDWTPWYTSRQVNQIVLEFSILCSTIYN. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00548 446 FunFam Carboxypeptidase 34 294 - -
Seca5g00548 446 Gene3D - 330 367 - -
Seca5g00548 446 Pfam Serine carboxypeptidase 45 430 IPR001563 GO:0004185|GO:0006508
Seca5g00548 446 Gene3D alpha/beta hydrolase 34 294 IPR029058 -
Seca5g00548 446 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 427 IPR001563 GO:0004185|GO:0006508
Seca5g00548 446 Gene3D - 376 444 - -
Seca5g00548 446 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Seca5g00548 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Seca5g00548 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Seca5g00548 446 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Seca5g00548 446 SUPERFAMILY alpha/beta-Hydrolases 35 427 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00548 Seca-Chr5 12467634 12477781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00548 338 438 Calmodulin-binding Proteins AT2G22960 29.703 3.99e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00548 K16297 - gmx:100781503 749.584