Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00539 ATGGGTGCACCTAAAGTTGCCAGATGTGGAAGAACAAGGAAATCAAAAGTTAAGAATTCAATTTCTAGGCCAGCAGGCAGAGTGGGTAAATTTGATTTGACTGATCTACAATGGACCAATAACATTCCAGAGTGTCCTGTATACCACCCATCAGAAAAGGAGTTTGAGGACCCTTTTGTATATCTACAGAACATTGCTCCAGAGGCATCTAAATTTGGTATATGCAAAATTGTTTCTCCTATAGTTGCCTCTACTCCTGCTGTTGTTGTCTTGACCAAAGAGAAAAAGGACTTCAAGTTTGAAACTAATGTACAGCCTCTTGGGATTTCTGAGTGGAATGAGAAAGACATGGTAACCTTTTCTATGAGAGGAAGGAAATACACATATCATGAATTTGAGGCTCTGGCAAATGATGCTTTTCTCAGTAGATTTTACAGTTTTGGGGGTCTTTCATCTTCATATGTGGAAAAGGAGTTCTGGCATGAGATGGTGTATGGAGAGAAGGGAACGGTTGAGTATGGAGTCAATATTGAGGGTAGTGCCTTTTCATGTGATCCTGATGACAAGCTTGGAAAGAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCCACAATCCACATTGCGGTTAGTTGACAAGGAAATTCCTGGAATAACTGATCCAATGCTTTACATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTGGAAGATCACTATTTGTACAGCATAAATTATCACCATTCAGGTGCTAATAAAATTTGGTATGGGGTGCCATACCATGCAGCCTCTCAATTTGAAAATGTTGCCTTACATAATGTGTATTGCAATAAAATCTTACCAAAAAATGGAGAAGATGGGGCTTTCAAACTTCTTGCACATAAAACAACCATGTTCCCTCCAATTGTCTTGTTACAAAATGATGTGGCAGTTTACAAGGCTATCCAGAAGCCAGGAGAGTTTGTCATTACCTTTCCTAGAGCATATCATGCTGGATTTAGTACTGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGTGATTGGTTTCCATTAGGGGCTGAAGCTAGTAAACGTTATGCACATCTCAGAATGTTTCCTATTATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCAGATTTACAAGTCCTTAAAAATAAGAGGTTCAAAGAACAAACTTAAGGACTTGGCATCTTATCATGCTATTATACTGTCTTTCTTGCATCTTATGCAATTTTATAAGAAGGCCCTTTTGAGACTGAATGGTTCAGTAGAGTTTTCAAGTTCTTCAAATACCATAGGTACCCTGATATGCCATGACTGCCACAGGGATTGTTATGTAGCTTACATGCTGTGCAAGTCATGTTATTCTTATCCAATTTGTCTTTACCATGATATTGCATCAGAAAAGTGCTCTTGTGGGAGAAAATATACTATTTTCAAGAGAGATGACATGTTGTCAATGGAAAATGCTGCCAAAAAATTTGAACAGGAAAATGATATTCATTTGCAAGTTCAGAGAAAAATGAGTTGTAATTGTGGAGCTAACACATCAGTTCTATCAAGTACATTCTCCTGTATCAGAAATGAATGTGTCCAAGATCTCAAGAAAAAACCCTGGCATGAAGAGACAGGTACCAGAAGAAGTGCTAATTCTCTAGGATCAGTGTCTAAACGAAAAACAAGAGAAGTGGACAGCATCAAGCTCAATGTTGAAAAGATGAACAAGACAACAATTAAGCATTGTGGAAAATAA 1764 0.3821 MGAPKVARCGRTRKSKVKNSISRPAGRVGKFDLTDLQWTNNIPECPVYHPSEKEFEDPFVYLQNIAPEASKFGICKIVSPIVASTPAVVVLTKEKKDFKFETNVQPLGISEWNEKDMVTFSMRGRKYTYHEFEALANDAFLSRFYSFGGLSSSYVEKEFWHEMVYGEKGTVEYGVNIEGSAFSCDPDDKLGKSKWNLKNFSRLPQSTLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGVPYHAASQFENVALHNVYCNKILPKNGEDGAFKLLAHKTTMFPPIVLLQNDVAVYKAIQKPGEFVITFPRAYHAGFSTGFNCGEAVNFAIGDWFPLGAEASKRYAHLRMFPIIPYEELLCKEAMQIYKSLKIRGSKNKLKDLASYHAIILSFLHLMQFYKKALLRLNGSVEFSSSSNTIGTLICHDCHRDCYVAYMLCKSCYSYPICLYHDIASEKCSCGRKYTIFKRDDMLSMENAAKKFEQENDIHLQVQRKMSCNCGANTSVLSSTFSCIRNECVQDLKKKPWHEETGTRRSANSLGSVSKRKTREVDSIKLNVEKMNKTTIKHCGK. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00539 587 Pfam JmjC domain, hydroxylase 222 345 IPR003347 -
Seca5g00539 587 PANTHER LYSINE-SPECIFIC DEMETHYLASE 38 561 - -
Seca5g00539 587 SUPERFAMILY Clavaminate synthase-like 123 383 - -
Seca5g00539 587 SMART JmjN_1 44 80 IPR003349 -
Seca5g00539 587 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g00539 587 Pfam jmjN domain 46 78 IPR003349 -
Seca5g00539 587 ProSiteProfiles JmjC domain profile. 192 362 IPR003347 -
Seca5g00539 587 ProSiteProfiles JmjN domain profile. 45 86 IPR003349 -
Seca5g00539 587 Gene3D Cupin 45 405 - -
Seca5g00539 587 MobiDBLite consensus disorder prediction 545 564 - -
Seca5g00539 587 SMART cupin_9 192 362 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00539 Seca-Chr5 12291589 12295427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00539 41 503 JUMONJI Transcription Factor Family AT2G34880 32.143 6.10e-66 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca5g00539 JmjC 9.5e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00539 - - cam:101502558 809.29