Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00531 ATGGCAAACCCTAGGGTCTTCTTTGACATGGCCATCGCCGGCCAACCTGTCGGCCGCATCGTCTTCGAGCTCTACGCCGATGTCACCCCTAGGACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGAGTCGGTCGCAGCGGCAAGCCTCTCCACTTCAAGGGCTCTGCCTTCCACCGTGTGATCCCTAACTTCATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGAGAGTCGATCTACGGCGCCAAGTTCGCCGATGAGAACTTCATCAAGAAGCACACCGGTCCCGGAGTGCTTTCTATGGCAAACGCTGGTCCTGGAACCAACGGATCTCAGTTCTTCATCTGCACGACCAAGACCGAGTGGCTTGACGGAAAGCACGTTGTGTTCGGACAGGTTGTTGACGGAATGAATGTGGTGAAGGAGATCGAGAAGGTTGGGTCAAGCTCCGGCAAGACCGCTAGGCCGGTGGTTATTGCTGATTGCGGTCAACTCTCTTAG 519 0.578 MANPRVFFDMAIAGQPVGRIVFELYADVTPRTAENFRALCTGEKGVGRSGKPLHFKGSAFHRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGVLSMANAGPGTNGSQFFICTTKTEWLDGKHVVFGQVVDGMNVVKEIEKVGSSSGKTARPVVIADCGQLS. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00531 172 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9 169 IPR002130 GO:0000413|GO:0003755
Seca5g00531 172 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Seca5g00531 172 PIRSF Peptidylpro_ismrse 1 172 IPR024936 GO:0003755
Seca5g00531 172 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Seca5g00531 172 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Seca5g00531 172 CDD cyclophilin_ABH_like 4 169 - -
Seca5g00531 172 Gene3D - 1 172 IPR029000 -
Seca5g00531 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 171 - -
Seca5g00531 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Seca5g00531 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Seca5g00531 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Seca5g00531 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Seca5g00531 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Seca5g00531 172 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00531 Seca-Chr5 12104800 12105318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00531 18 152 U-box Gene Family AT5G67530 49.265 9.86e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00531 K01802 - gmx:106795232 328.176