Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00521 ATGGATTGTACAGCTGCAAGAAAGACACAAAAGGCTGACCGGGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTTGGCAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGACACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTATGCTAAATGAAGAATCTCGTGAGTTGTCTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAACTTGAATAATCAGTACCAGCAGCAACTCAGGACTATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATATCCATATCCAGTGCCAATGGCAGTACCTCCTGGTCCAATCCCCATGCAGCCCTACCCATTCTATGCTAATCAACATCCTGCAGTCATCCCTAACCCCTGTTCAACATATGTTCCTTATATAGCCCCCAATACCCTTGTTGAACAGCAATCCACTCAGTTTGTATCCCCACCACTTCATCCAGGCAGTCGGTCCCATGTGTCAGGAAAACAAGACTCCAAAAACAAATCATCCAGAGAGAGCAAGGCTGAAAAAAATGAGGACTCTAATGATGTCACAACAGACCTTGAGTTGAAGACTCCCGGGTCTTCTGCAGACCAGGTTAGTGTTGTTTGTCAAGGGAATCTTGTAACCAACCATAGCTGCGGTATAAGAGGTATTGTATATTTGTATTCAAGTGGTGTTTGTTGTTGGGTTTTGCAGGATTTATCATCTGGACAAAGAAAATCCAGCAAATCAAGGAAAGAAAGCAGTTTCACAGAAGGTAGTTCATTAGGTAGGTGTTCTTCATCTCATAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAGAAAGACTAATGAATGA 948 0.4188 MDCTAARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTIQLLKDLTSQVSKLKDEYAMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQQQLRTMFPWTAMDHSVMMAPPSYPYPVPMAVPPGPIPMQPYPFYANQHPAVIPNPCSTYVPYIAPNTLVEQQSTQFVSPPLHPGSRSHVSGKQDSKNKSSRESKAEKNEDSNDVTTDLELKTPGSSADQVSVVCQGNLVTNHSCGIRGIVYLYSSGVCCWVLQDLSSGQRKSSKSRKESSFTEGSSLGRCSSSHSVQDSSSSSVVGSRKTNE. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00521 315 Coils Coil 5 25 - -
Seca5g00521 315 MobiDBLite consensus disorder prediction 274 315 - -
Seca5g00521 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 76 IPR036638 GO:0046983
Seca5g00521 315 Gene3D - 4 85 IPR036638 GO:0046983
Seca5g00521 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Seca5g00521 315 SMART finulus 12 62 IPR011598 GO:0046983
Seca5g00521 315 MobiDBLite consensus disorder prediction 176 229 - -
Seca5g00521 315 CDD bHLH_AtILR3_like 11 85 - -
Seca5g00521 315 Coils Coil 46 108 - -
Seca5g00521 315 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Seca5g00521 315 PANTHER TRANSCRIPTION FACTOR BHLH121 2 314 IPR044579 GO:0003700|GO:0006879
Seca5g00521 315 MobiDBLite consensus disorder prediction 192 219 - -
Seca5g00521 315 MobiDBLite consensus disorder prediction 282 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00521 Seca-Chr5 11941290 11945048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00521 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 65.546 3.37e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g00521 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00521 - - cam:101491902 439.113