Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00514 ATGAATTCAGCTAACACCCAGGTTATAATGGATGGACAACATCCGGGGTATGTCCATCAAACTTGCAAGGCAATCTGTGTAGGGGGCAAGAACTCTTTAAGGAAAAAGTTTCTCACTTCCATTGGAGCACATGAGATTTTCAGACCAGAGACGTGGAAAGCAGCATTGACAGAGTTAGTTGCAACTGCCTCTCTAATGTTCACATTGACCACTTCCATTATTTCATGCTTGGACTCACATGAAGTAGATCCTAAGCTTCTTGTTCCCTTTGCAGTATTCATCATAGCCTTTTTGTTCCTAATTGTGACAGTGCCACTATCTGGGGGGCACATGAGCCCTGTTTTCACATTCATCGCTGCTCTGAAAGGTGTTGTGACTCTTACTCGTGCCCTCCTTTATCTGTTAGCACAATGCATTGGCTCAATAATTGGTTTCTATATACTAAAGTGTGTGATGGATCCAAAATTAGTAGATACATATTCTTTGGGAGGTTGTGCTATTGGTGGCAAAGGAGTGAATTATGGTATAAAGCAACATGATGCTTTGTTGTTGGAATTTACATGTACATTTGTGGTGCTCTTTTTGGGTGTCACATTGGAATTTGACAAGAAAAGGTCCAAGGATTTAGGCTTGTCAATGGTATGCTTGGTGGTAGCAGGAGCAATGGCACTGGCAGTATTTGTGTCCATAACTGTAACTGGGCGGGCTGGTTATGCTGGTGTTGGGCTTAACCCAGCAAGATGCTTAGGCCCAGCATTGCTTCATGGAGGCTTACTTTGGAATGGACATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGTTTAATCTATTATAGTGTGTCTGTAAACTTGCCTAAGGAGGGTTTGGTTTGGGTAGATGGAGAATATGATATATTAAAATTGGCTCTGGGCTCTTGTGGGACTGTTTCTAACGGTGCCGTTTCAAACGATCATGTAATAGAAGGGAGTGCAGGGTTCCAAGTCCATGTATGA 993 0.43 MNSANTQVIMDGQHPGYVHQTCKAICVGGKNSLRKKFLTSIGAHEIFRPETWKAALTELVATASLMFTLTTSIISCLDSHEVDPKLLVPFAVFIIAFLFLIVTVPLSGGHMSPVFTFIAALKGVVTLTRALLYLLAQCIGSIIGFYILKCVMDPKLVDTYSLGGCAIGGKGVNYGIKQHDALLLEFTCTFVVLFLGVTLEFDKKRSKDLGLSMVCLVVAGAMALAVFVSITVTGRAGYAGVGLNPARCLGPALLHGGLLWNGHWVFWLGPFLACLIYYSVSVNLPKEGLVWVDGEYDILKLALGSCGTVSNGAVSNDHVIEGSAGFQVHV. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00514 330 Gene3D Glycerol uptake facilitator protein. 38 285 IPR023271 -
Seca5g00514 330 Pfam Major intrinsic protein 48 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00514 330 PRINTS Major intrinsic protein family signature 53 72 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00514 330 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00514 330 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00514 330 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00514 330 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00514 330 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00514 330 PANTHER AQUAPORIN-LIKE 29 304 - -
Seca5g00514 330 SUPERFAMILY Aquaporin-like 52 276 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00514 Seca-Chr5 11901971 11905820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00514 45 293 Major Intrinsic Protein MIP AT2G36830 30.000 9.21e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00514 K09866 - gmx:100804160 512.686