Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00513 ATGGATTCATCAAATTCCCAAGTGATTGATATCGGTGATCAATTTCCAAAGGCTGTTCAAAGTTGTGAGGTATGGTACTCTGTTCGTAAGAATCCTCCAGAGGCCAAACTTCTTTCCTCCATTGGTGCCCATGAAATTTTATCAGTAGAGACATGGAAAGCAGCTTTGACAGAGTTAGTTGCAACTGCCTCTCTAGTGTTCATCCTCACGAGTTCCATTATTGCATGTTTGGAGTCACATGAGGTCAATCCTAGGCTTATCATTCCCTTTGCAGTGTTTATCATAGCCTTTTTGTTCCTAATTGTGACAGTTCCACTATCTGGGGGGCACATGAGCCCTGTTTTCACCTTCATCGCTGCTCTAAAAGGTGTTGTGACTTTTTCTCGTGCTCTCCTTTATGTGTTAGCACAATGTATTGGCTCAATAATCGGTTTCTATGTACTAAAGTGTGTGATGGATCCAAAATTAGTATATACATATTCTTTGGGAGGTTGTGCAATTGGTGAGAAAGGACAAAGTTCTACTATAAAGCAACAAGATGCTCTGTTGTTGGAATTTGCTTGTACTTTTGTGGTGCTCTTTGTGGGTCTCACCAATGCATTTGACAAGTGA 612 0.4085 MDSSNSQVIDIGDQFPKAVQSCEVWYSVRKNPPEAKLLSSIGAHEILSVETWKAALTELVATASLVFILTSSIIACLESHEVNPRLIIPFAVFIIAFLFLIVTVPLSGGHMSPVFTFIAALKGVVTFSRALLYVLAQCIGSIIGFYVLKCVMDPKLVYTYSLGGCAIGEKGQSSTIKQQDALLLEFACTFVVLFVGLTNAFDK. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00513 203 PANTHER AQUAPORIN-LIKE 28 203 - -
Seca5g00513 203 Pfam Major intrinsic protein 46 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00513 203 Gene3D Glycerol uptake facilitator protein. 38 203 IPR023271 -
Seca5g00513 203 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00513 203 PRINTS Major intrinsic protein family signature 53 72 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00513 203 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00513 203 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00513 203 SUPERFAMILY Aquaporin-like 49 201 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00513 Seca-Chr5 11878990 11879727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00513 31 194 Major Intrinsic Protein MIP AT4G35100 30.178 3.34e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00513 K09866 - gmx:100804160 262.692