Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00512 ATGGTTTGTACTGTGGTAGCAGCATCCATGGCACTGGTAGTTTTTGTTTCCATAACTGTAACTGGCCGGGCTGGTTATGCTGGTGTTGGGCTTAACCCAGCAAGGTGCTTAGGCCCAGCATTGATTCATGGAGGCTCACTTTGGAACGGACATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGCATAATCTATTATACTGTCTCTGTCAACCTACCAAAAGAGGGTTTGGATTGGGTCGATGGAGAATATGATATCTTAAAGTTGGCTCTGGGTTCTCGTCGGGCTGTTCCCAACAGTGTCGTTTCGTCGACCCAAATATAA 324 0.4753 MVCTVVAASMALVVFVSITVTGRAGYAGVGLNPARCLGPALIHGGSLWNGHWVFWLGPFLACIIYYTVSVNLPKEGLDWVDGEYDILKLALGSRRAVPNSVVSSTQI. 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00512 107 Pfam Major intrinsic protein 5 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00512 107 PANTHER AQUAPORIN-LIKE 1 90 - -
Seca5g00512 107 Gene3D Glycerol uptake facilitator protein. 2 75 IPR023271 -
Seca5g00512 107 SUPERFAMILY Aquaporin-like 11 66 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00512 Seca-Chr5 11878642 11878965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00512 9 75 Major Intrinsic Protein MIP AT1G17810 40.541 1.26e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00512 K09866 - gmx:100797262 181.8