Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00511 ATGGATCGAGCAGTTGATATTGATGAACGATTTTCGAGGCATTCTCAAAGTCGTGATGCAAGGTCGACCTTCGTAACTAAGAAACCCTTAGGCTCCAAATTTCTTTCCTCCATTGGTGCCCATGAATTTTTTACATTAGAGACATGGAAAGCAGCATTGACAGAGTTAGTTGCAACTGCCTCTCTAATGTTCATCTTGACGAGTTCCATTGTTGCATGTTTGGAGTCACATGAGGTCAATCCTAAACTTATCATTCCCTTTGCAGTATTCATCATAGCCTTTTTGTTCCTAATTGTGACAGTGCCACTATCTGGAGGGCACATGAGCCCTGTTTTCACATTCATCGCTGCTCTAAAAGGTGTTGTGACTCTTTCTCGTGCTCTCCTTTACGTGTTAGCTCAATGCATTGGCTCAATAATTGGTTTCTATATATTAAAATGTGTGATGGAGCCAAAATTAGTAGATACATATTCATTGGGTGGTTGTTCCATTGGTGAGAAAGGACAAAGTTCTACTATAAAGCAACAAGATGCTCTGTTGTTGGAATTCTGTTGTACATTTGTGGTACTCTATGTGGGTCTCACCAATGCATTTGACAAGAGAAGGATCAAGGAGTTGGGCTTGCCAATGGTTTGTATGGTGGTAGCTGCATCCATGGCATTGGTAGTTTTTGTGTCCATAAGTGTGACTGGGCGGGCTGGGTATGCTGGTGTTGGGCTTAACCCAGCAAGATGCTTAGGCCCAGCATTGCTTCATGGTGGCTCACTTTGGAACGGGCATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGTATAATCTATTATAGTGTCTCTGTCAACCTACCAAAGGAGGGTTTGGATTGGGTTGATGGAGAATATGATATCCTAAGATTGGCTTTGGGTTCTTGCGGGACTGTCTCTAACAGTGCTGTTTGA 936 0.4316 MDRAVDIDERFSRHSQSRDARSTFVTKKPLGSKFLSSIGAHEFFTLETWKAALTELVATASLMFILTSSIVACLESHEVNPKLIIPFAVFIIAFLFLIVTVPLSGGHMSPVFTFIAALKGVVTLSRALLYVLAQCIGSIIGFYILKCVMEPKLVDTYSLGGCSIGEKGQSSTIKQQDALLLEFCCTFVVLYVGLTNAFDKRRIKELGLPMVCMVVAASMALVVFVSISVTGRAGYAGVGLNPARCLGPALLHGGSLWNGHWVFWLGPFLACIIYYSVSVNLPKEGLDWVDGEYDILRLALGSCGTVSNSAV. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00511 311 Gene3D Glycerol uptake facilitator protein. 35 283 IPR023271 -
Seca5g00511 311 PRINTS Major intrinsic protein family signature 50 69 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00511 311 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00511 311 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00511 311 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00511 311 PRINTS Major intrinsic protein family signature 222 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00511 311 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00511 311 Pfam Major intrinsic protein 45 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g00511 311 PANTHER AQUAPORIN-LIKE 23 300 - -
Seca5g00511 311 SUPERFAMILY Aquaporin-like 46 273 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00511 Seca-Chr5 11758018 11759199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00511 1 273 Major Intrinsic Protein MIP AT2G37170 27.465 2.09e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00511 K09866 - gmx:100797262 469.544