Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00506 ATGATTGAAGAACTTGAAGTGTTGAGCAAACTTTGTCATGATAATCTAATGCAACTCATTGGATATGTTATTTATAATGATGTTTCTCTTCTCATTCATCATTATTTACCCAATGGAACATTAGCTCAGCTTCTTCATGAATCTCCAAGACAACCTGTATATCAACCAGACTGGTCAGTTCGACTATCCATTTTTATTGGAGTGGCAGAGGGTTTGGCTTTCCTTCATCAATTGGCAATCATCCACCTTGACATTTCTGCTAGCAATGTTCTCTTGGATGCAAATTCGAAGCCATTGATTGGGGAGATTGAGATATCAAAACTTCTGGATCCAACCAAAGGCACAAGCAGTATTAGTACAGTTGTAGGCTCATTTGGTTACATTCCACCAGGTATAACATTTTCTGGTAGTACTACTTTTTTTTTGTTGTGTGTTCAGTTTTATATAAGTACAGTTACTAATGATCTACTAATACTTGTTACATTCCACCAGGAACAAGCAATATTAGTACAGTTACTAATGATATGCTAA 531 0.3578 MIEELEVLSKLCHDNLMQLIGYVIYNDVSLLIHHYLPNGTLAQLLHESPRQPVYQPDWSVRLSIFIGVAEGLAFLHQLAIIHLDISASNVLLDANSKPLIGEIEISKLLDPTKGTSSISTVVGSFGYIPPGITFSGSTTFFLLCVQFYISTVTNDLLILVTFHQEQAILVQLLMIC. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00506 176 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g00506 176 SUPERFAMILY Protein kinase-like (PK-like) 2 138 IPR011009 -
Seca5g00506 176 ProSitePatterns Tyrosine protein kinases specific active-site signature. 80 92 IPR008266 GO:0004672|GO:0006468
Seca5g00506 176 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 130 - -
Seca5g00506 176 Pfam Protein tyrosine and serine/threonine kinase 1 111 IPR001245 GO:0004672|GO:0006468
Seca5g00506 176 Gene3D Transferase(Phosphotransferase) domain 1 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00506 Seca-Chr5 11369539 11370069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00506 1 139 Receptor kinase-like Gene Family AT2G41820 66.906 2.12e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca5g00506 PK_Tyr_Ser-Thr 6.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00506 - - gmx:100789684 216.468