Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00492 ATGATCAGCGCAAAAAGACTTACAGAAATGGCAAGGAAGTGGCAAAAATTGGCTGCTGGAAAGCGCAAGAGAATTTCATACCCAAGAAACGAATTGGATTTGAATTCTTCAGCAGCAAATAAGGGCCATTTCGTTGTTTACAGCATCGATCATAAGCGATTTGTGGTTCCCCTTAAGTATCTTAGCACGAACATCTTCAGGGAACTTCTCAAATGGTCAGAGGAAGAGTTTGGATTGCCTTCTAATGGACCAATTACGTTACCATGTGATGGTGTCTTCTTGGAATATGTGATCTCGTTGGTTCAAGAATGCATCCCAGAAGATGTGGAGAAGGCTTTGATCACTTTCATGGCTGCATGTCACAACGAGGCATCATCTTCTCTTCCTCTTAGGAAAAACAATGAACGAATAATTATCTATGGCTTTTGA 429 0.4103 MISAKRLTEMARKWQKLAAGKRKRISYPRNELDLNSSAANKGHFVVYSIDHKRFVVPLKYLSTNIFRELLKWSEEEFGLPSNGPITLPCDGVFLEYVISLVQECIPEDVEKALITFMAACHNEASSSLPLRKNNERIIIYGF. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00492 142 Pfam Auxin responsive protein 12 100 IPR003676 GO:0009733
Seca5g00492 142 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 121 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00492 Seca-Chr5 10767003 10767431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00492 3 104 Calmodulin-binding Proteins AT4G34750 34.951 6.39e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00492 - - ccaj:109798531 205.297