Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00487 ATGGCATCCAATATGGAAGACATGAACATGGTTGAGGAAATTACACTTCCAGGGTTCAGATTTCACCCAACAGAAGAAGAGCTCCTTGATTTCTATCTGAAAAACATGGTTGTTGGCAAGAAACTTCGTTTTGATGTCATTGGTTTCCTCAACATCTATCACCATGATCCTTGGGACTTGCCTGGTCTTGCAAAGGTTGGGGAAAGAGAATGGTACTTCTTTGTGCCAAGGGACAAAAAGCATGGAAGTGGGGGAAGGCCTAACCGCACCACTGAAAAGGGGTTCTGGAAAGCCACAGGTTCAGACAGGAAAATTGTGACCTTATGTCAGTAG 333 0.4444 MASNMEDMNMVEEITLPGFRFHPTEEELLDFYLKNMVVGKKLRFDVIGFLNIYHHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLCQ. 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00487 110 SUPERFAMILY NAC domain 5 106 IPR036093 GO:0003677|GO:0006355
Seca5g00487 110 Gene3D NAC domain 24 109 IPR036093 GO:0003677|GO:0006355
Seca5g00487 110 Pfam No apical meristem (NAM) protein 17 105 IPR003441 GO:0003677|GO:0006355
Seca5g00487 110 ProSiteProfiles NAC domain profile. 15 110 IPR003441 GO:0003677|GO:0006355
Seca5g00487 110 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00487 Seca-Chr5 10668585 10669139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00487 10 110 NAC Transcription Factor Family AT2G17040 77.228 2.01e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g00487 NAM 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00487 - - gmx:100816770 211.846