Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00485 ATGCTTCAAAGCTTGGTCCCTCGATCCCCACTCACTTCTTCCAACCCTAACGCCATGAAGACGAAGCGCGACCGCGACGCCGGTGATTCCACAGTCAACGAACAAACCTTCAAGAGACCGAACTTCTCCGGCGAAAAGACGGTGGAGGAAGGCGAAGGACACGAAGAGGAACAAGCCTTCGAACCAGAATCCGAAGGCGAATCCACTGGTCTCAAACTCTTAGGCCTTTTACTCCAATGCGCTGAGTGCGTCGCTATGGATAATCTCGACTTCGCCAACGACCTCTTACCGGAGATCGCTGAACTCTCCTCGCCGTTCGGAACTTCGCCGGAGCGCGTTGGCGCGTACTTCGCTCAGGCGCTTCAAGCGCGAGTTGTGAGCTCCTGCCTCGGTACTTACTCGCCGCTAACCACCAAATCGGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCGTTCCAATCGTACAACTCTGTCTCGCCGTTGGTGAAGTTCTCGCACTTCACTGCGAACCAGGCTATCTTCCAGGCCTTGGACGGCGAGGATCGTGTCCACATCATCGACCTCGACATCATGCAAGGTCTTCAATGGCCAGGATTGTTCCACATCCTCGCCTCAAGGTCCAAGAAGATCCGCTCCATGAGGATCACCGGGTTCGGATCCTCCTCGGAGCTTCTAGAATCAACAGGAAGAAGACTCGCTGATTTTGCGAGTTCGCTCGGGCTTCCGTTCGAGTTCCACCCGGTGGAAGGCAAAATTGGAAGCGTCACGGACCTGAGTCAACTCGGTGTTAGGCCAAACGAGGCCATAGTGGTGCACTGGATGCACCATTGCTTGTACGATATAACCGGGAGTGATTTAGGGACGTTGAGATTGCTGAGTCAGCTAAGGCCGAAGCTGATCACGACCGTTGAACAGGATCTGAGCCACGCCGGGAGCTTCCTCGCGAGGTTCGTGGAGGCGTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGATTAGGTGCGGACAGCCTAGAGAGGCATACGGTGGAGCAGCAGCTGTTGGGCTGCGAGATCAGGAACATCGTCGCCGTAGGTGGGCCCAAGAGGACTGGAGAGGTTAAGGTCGAGAGGTGGGGGGATGAGTTGAAACGGGTCGGGTTTCGACCCGTTTCACTACGTGGAAACCCGGCTGCACAGGCAAGCTTGTTGCTGGGGATGTTCCCTTGGAGAGGGTATACGCTGGTGGAAGAGAATGGTTCCCTCAAGATTGGTTGGAAGGATCTCTCTCTGTTGATTGCCTCCGCTTGGCAGCCGTCTGATTTGATTACTTACACTGATTAA 1332 0.5511 MLQSLVPRSPLTSSNPNAMKTKRDRDAGDSTVNEQTFKRPNFSGEKTVEEGEGHEEEQAFEPESEGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGTYSPLTTKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTDLSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELKRVGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKIGWKDLSLLIASAWQPSDLITYTD. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00485 443 MobiDBLite consensus disorder prediction 1 66 - -
Seca5g00485 443 MobiDBLite consensus disorder prediction 1 18 - -
Seca5g00485 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 58 429 IPR005202 -
Seca5g00485 443 ProSiteProfiles GRAS family profile. 64 434 IPR005202 -
Seca5g00485 443 Pfam GRAS domain family 75 434 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00485 Seca-Chr5 10596304 10597635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00485 19 437 GRAS Transcription Factor Family AT5G41920 66.118 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g00485 GRAS 1.8e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00485 - - gmx:100816249 766.148