Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00484 ATGTTGTTTGTGCATACATTTTTGTCTATTTCTATTCACATTAATACTTTTATTCCTTCAAAGAAAATGGGACACAGATTTAACTTCATCAATGACATGAAAGCTGGTAGAGTTGACTGGAGAATAAAGGTTCGGGTCATTAGTATGTGGACAAGTTATGAATTTAAGAGTCCTCAAGTAATTTCAAGTATCGAGATGGTTCTTGCTGACGAGAAGGGTGATAGAATTCATGCTACTATAAAACGAGCAAATTTGGATATGCATGTAAACATGATACAGGAAGGATTTACCTATGTCATGCAAAATATGATGATTGCTCAACCAGAGAAAAACTTGAAGACAGTTAAGCATAAATTCAAGCTGAATTTCATGCGAACAACAAGAGTTACTCCCACAAATGACCATCATATTCCTGTTAACTGTTTTAAATTCCTTTCATTCGAACAAATTATTAATGGACATGATGACGGTTGCTTATTTGATGTTATTGGTCATGTTGTTGAGAAAGATGAAATTAAAGAAAATGACAGAGAAGGGAAAAAAAGCAAACTGATTGACGTTGTTCTTGAGGATTTAGAGAAGAATCGTCTCATATGCACTCTTTGGGGACAATTTGCTGAAGAAATGAGTTCCTTCCTCAAGAAAGAGTCAGAAAACAATGACAGTATTGTTGTTATTTTACAGCTGGGGAAAAGAAAAATTTTTAATGGTCAAGTTGGGATTTCAAATTCATACAATGGCACCAAATTACATATCAATGCTGATGTGCCTGAAGTTGCTGCTTACAAAGAGAAACTTGGTAATAGTGACAATTCTGTTACTCAAGTAGTAAGTCAAATGTCATCACAACAATCTCTTTCAATTGGTGAGGATTTGCTGATTTCACGTAGATTGACCATTTCTGAAATAATTGATAGCATTCAGCCTACTGTTGGCTCATTATTGGCTACCATAATAGAGATAGATCTGGACAAGGATTGGTGGTTTCAATCATGTTCCAAATGTTTTAGAAATGTTGTCAAAATGGGGACAAAGTATTATTGTCAACAGTGTAAGAGTTCTGCATCGGTTCCAAGGTTTAAAGTGAGTGCAAATGTTATCGATGAAACTGGATCGGCATGTTTGATTATGTTTGATGCTGTCCTATCTAAGTTTATAGGCAAAACAGCGTCTGATTTACTTCTGGAAAATGATAAGGCAAAAGGAAAGGGATATTGTCCCCGTGAGATTGATGCATTGGTTGATAAGGATTTTTTGTTCAAAGTGGAAGTTTCTGATGCTAATATTGTCTACAACTTCAAGACATACAAAGTGAAATTCATGACCAATGAAAAAGATTTGATTGATCAATTTAAGATTATGCATTCGATTAAGGATCTTGATCAAGATGATGGGGAAAGTCCAGATCCTGATAGAATTTCCCCACAAATTGAGGATAATATGAAGCATCACTGTGAAAAAGAACCTACAGGTTCTAAAGCTGATTTATCTCAACACATTGAGGACATTTCATGTGATGGTGACCAAGTCACACCGTTGAGCAAGGTGGCTGGAAAAAGAAGTATTGAAACAGTGGATATAACAACTGACTTTGATGAGGGAGCAATTGAATCTTCAAGCACAAAAAACCCAAAAAATGTGAAGATCAAGATGGAGCCAAAAGATTAG 1668 0.3531 MLFVHTFLSISIHINTFIPSKKMGHRFNFINDMKAGRVDWRIKVRVISMWTSYEFKSPQVISSIEMVLADEKGDRIHATIKRANLDMHVNMIQEGFTYVMQNMMIAQPEKNLKTVKHKFKLNFMRTTRVTPTNDHHIPVNCFKFLSFEQIINGHDDGCLFDVIGHVVEKDEIKENDREGKKSKLIDVVLEDLEKNRLICTLWGQFAEEMSSFLKKESENNDSIVVILQLGKRKIFNGQVGISNSYNGTKLHINADVPEVAAYKEKLGNSDNSVTQVVSQMSSQQSLSIGEDLLISRRLTISEIIDSIQPTVGSLLATIIEIDLDKDWWFQSCSKCFRNVVKMGTKYYCQQCKSSASVPRFKVSANVIDETGSACLIMFDAVLSKFIGKTASDLLLENDKAKGKGYCPREIDALVDKDFLFKVEVSDANIVYNFKTYKVKFMTNEKDLIDQFKIMHSIKDLDQDDGESPDPDRISPQIEDNMKHHCEKEPTGSKADLSQHIEDISCDGDQVTPLSKVAGKRSIETVDITTDFDEGAIESSSTKNPKNVKIKMEPKD. 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00484 555 CDD RPA1_DBD_B_like 161 263 - -
Seca5g00484 555 Gene3D - 281 454 IPR012340 -
Seca5g00484 555 PANTHER OS03G0429900 PROTEIN 27 521 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca5g00484 555 Gene3D - 28 135 IPR012340 -
Seca5g00484 555 CDD RPA1_DBD_A_like 41 129 - -
Seca5g00484 555 Pfam Domain of unknown function DUF223 65 152 IPR003871 -
Seca5g00484 555 MobiDBLite consensus disorder prediction 534 555 - -
Seca5g00484 555 SUPERFAMILY Nucleic acid-binding proteins 142 268 IPR012340 -
Seca5g00484 555 Gene3D - 136 276 IPR012340 -
Seca5g00484 555 SUPERFAMILY Nucleic acid-binding proteins 296 434 IPR012340 -
Seca5g00484 555 CDD RPA1_DBD_C 300 462 IPR047192 -
Seca5g00484 555 SUPERFAMILY Nucleic acid-binding proteins 27 134 IPR012340 -
Seca5g00484 555 Pfam Replication factor-A C terminal domain 315 426 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00484 Seca-Chr5 10581810 10585001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00484 19 393 Core DNA Replication Machinery Family AT5G08020 25.253 3.08e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00484 - - mtr:112422829 343.969