Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00483 ATGGCTTCTATGATCAAAGGAGAATCTTCCAAAACAAAACCACTGATCGATTATTTCCAAGCCAAGTTGGATCCATCTAAGGCTGTTATACCTATTGATAGGTGTTTTCTTCATTTGTGGGAAAATGTATTCAAAGAACGAGATTTTTACTTGAGAGATCCTGAGCAGAATTGTCATGTTGTGAGAACTATTAGGAATAGAAATGGTGATTATGAATTTTACCCGGGAGTGCAGTACATGGTTGAGTTTTATTGGTTGGAAGGAATCTATACCGTCCACTTGGCATATGCTGGTACAAATTACTTTAACATCAGGATTTTAAATGAATCTAATCAAGAGATAAAATACCCTAAAAATAGAGGTTGGAAAAAAGAAGTTCTTACATGGCCCGATCATGTTGAACAAGAAGAAATTGGGTGGACAGTGAAAGTTACAAAAGCAATTGCATCTGCAAATAACCCTTTGCCAATTCCTGCTAGAATTGTTCGAACAATTCTTAAAGAAAACCAACATATGGTGTATATTTTTGATGAGGAGGGAGAAGCTTTTATTGTTGATCTGATTCCTGGACGAAGGAGTTCAGAATGCTTCCTAGGAAAGGGATGGTATGAGTATGTTAAGCAGAAAAATCTGAAGGAGGGAGACAATGTGAAGTTAACATTCGGTTATAGCCATAGGGACATTGATTCCCATATAATTAAGGGTTGA 708 0.3658 MASMIKGESSKTKPLIDYFQAKLDPSKAVIPIDRCFLHLWENVFKERDFYLRDPEQNCHVVRTIRNRNGDYEFYPGVQYMVEFYWLEGIYTVHLAYAGTNYFNIRILNESNQEIKYPKNRGWKKEVLTWPDHVEQEEIGWTVKVTKAIASANNPLPIPARIVRTILKENQHMVYIFDEEGEAFIVDLIPGRRSSECFLGKGWYEYVKQKNLKEGDNVKLTFGYSHRDIDSHIIKG. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00483 235 ProSiteProfiles B3 DNA-binding domain profile. 140 235 IPR003340 GO:0003677
Seca5g00483 235 SUPERFAMILY DNA-binding pseudobarrel domain 140 221 IPR015300 -
Seca5g00483 235 Gene3D - 134 234 IPR015300 -
Seca5g00483 235 Pfam B3 DNA binding domain 146 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00483 Seca-Chr5 10574001 10579826 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca5g00483 B3 5.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00483 - K09287 lja:Lj6g3v0497350.1 61.2326