Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00474 ATGGGATTTATGTTGCAAGAAGGGTCGTCTTCTGTAACTTCACCCTTGCAGTTCTTCTCCATGATGTCACTTTCACCTAGCTTAGGATCTCCCCACCCTTGGCTTAGAGAACTGAAATCTGAGGAAAGGGGTTTGTACTTGATTCAGTTGTTGCTTGCTTGTGCAAATCATGTTGCTGCTGGCAGTCTTGAAAATGCAAATACCATACTTGAACAAATTTCCCTGCTTGCTTCCCCTGAAGGGGATACCATGCAAAGAATTGCAGCATATTTTACTGAAGCACTTGCTGATAGGATCCTTAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACTAGAATGGTTATGGTTTCAGATGAAATTCTTGTTCAGAGGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTAGCATTGGTTCTGACAAACCAGGCTATCGTTGAAGCAATGGAAGGGGAGAAAATGATTCATATAATTGATCTCAATGCTGCTGAACCTGCTCAGTGGATTGCTCTCCTCCAAGTTTTGAGTTCACGTCCTGAAGGCCCTCCTCATTTGAGAATCACTGGGGTTCATCAGAAGAAAGAGATTCTAGACCAGATAGCTCATAGATTGACTGAAGAAGCAGAAAAGTTGGATATACCATTCCAGTTCAATCCTGTAGTCAGCAAATTAGAAAATCTTGATTTCGACAAACTTCGTGTAAAAACTGGGGAGGCACTTGCAATAAGTTCTATTCTCCAATTACATTCCCTTCTGGCCTGGGATGATGAATCCATACAGAGAAAATCTCCTCTTCTGTCAAAAAGCTCAAATGGAGTTCACATGCAAAGAGTCCTGCCAATGAGCCAAAGCACATTAGGTGATTTGCTTGAGAAAGACATGGCTAATGGATATACTCCAAGTCCTGACTCAACCTCATCCTCACCAGCATCTTTAACTACTTCAAATTCAATGAATATGGAGAGATTTCTTAATGCCTTGTGGGGATTATCACCAAAGGTCATGATTGTAACAGAACAAGACTCTCATCATAATGGTTCAACTCTGATGGAAAGGCTACTAGAAGCTCTATATTCTTATGCAGCATTATTTGATTGTTTGGAATCCACTGTCTCAAGAACCTCATTGGAGAGATTAAGGGTGGAGAAGATGCTTTTTGGAGAGCAAATCAAGAACATTATTGCATGTGAGGGATCTGAAAGAAAGGAAAGACATGAGAAGCTGGATAAGTGGCTCCAGAGATTTGATTTAGCTGGGTTTGGTAACGTGCCTTTAAGCTATTTAAATATGTTACAAGCAACAAGATTCTTGCAGAGCTTTGGTTGTGAGGGATATAAAATGAGGGAGGAAAATGGTTGTGTAGTAATTTGCTGGCAAGATCGGTCCTTGTTTTCAGTATCAGCTTGGAGATCCAGGAAGTGA 1425 0.4126 MGFMLQEGSSSVTSPLQFFSMMSLSPSLGSPHPWLRELKSEERGLYLIQLLLACANHVAAGSLENANTILEQISLLASPEGDTMQRIAAYFTEALADRILKTWPGIHRALNSTRMVMVSDEILVQRLFFELFPFLKVALVLTNQAIVEAMEGEKMIHIIDLNAAEPAQWIALLQVLSSRPEGPPHLRITGVHQKKEILDQIAHRLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAWDDESIQRKSPLLSKSSNGVHMQRVLPMSQSTLGDLLEKDMANGYTPSPDSTSSSPASLTTSNSMNMERFLNALWGLSPKVMIVTEQDSHHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLRVEKMLFGEQIKNIIACEGSERKERHEKLDKWLQRFDLAGFGNVPLSYLNMLQATRFLQSFGCEGYKMREENGCVVICWQDRSLFSVSAWRSRK. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00474 474 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 467 IPR005202 -
Seca5g00474 474 MobiDBLite consensus disorder prediction 299 316 - -
Seca5g00474 474 ProSiteProfiles GRAS family profile. 38 471 IPR005202 -
Seca5g00474 474 MobiDBLite consensus disorder prediction 294 316 - -
Seca5g00474 474 Pfam GRAS domain family 47 471 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00474 Seca-Chr5 10387716 10390711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00474 1 474 GRAS Transcription Factor Family AT1G50420 66.872 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g00474 GRAS 9.2e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00474 - - gmx:100814131 806.208