Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00469 ATGGAGTTCGTTGGCAAAAGCGTTAAGAAAGAGGTGAAAGGTGCTGGGATTGTTTCGGGAACTGTGAAATCCTACGATCCTTCCTCGGGGTTTTTCGAGATCCTCTACGAAGATGGTGATTCCGAGGAGTTGGAATCCTCTGACGTGGCTTCGCTTTTGGAATTTCAACCGGAGCTTGCCAAGGCCAAGCCTCGGGTCGGCCGGAAACCCAAGAAGCGCCGTCGGGTCGAGCGGAAGCGCGAAACGACCACGGTTTCAGGTAATGCTAGTGAGGATTTGGTTGGGGAGGGTAGTGAATTTAGCGGGGTTTTGGGTGGTGATGCTTCTGCTGGTGAATTAGGTAGTGGATTTGAGAGGGACTTGGGTGTAGGAAATGGGAATGGAGGGAATCTTATAGGCAATGTGAATGGAAGTGTGAGTGAAGAAACCATGCGAAATGAAATTGGGTTTGAAGAGAATTTGAATAGGAGTGTCTCTGCTAATGGGAATTGTGTTAAAGATGGGCTTGATTTGAATGCTGGGCTTAATCTGAACGAGGATATTAATTTGAATGATGTGTGTGGTTCGCCTTTTGACATTGGGGGTAGTTTGAAGAGAAGAGACTGCATTGACTTGAATTTGGATGTGAGTAATGAGGACGATGTCAATGCCGGAGGGGAAACATTGCAGCGGGAATGTAAGTTTGACTTGAATGTGGAGGTATGTGAAGAAATGAAGGAAGTTCAGGGTGATGATTATGGAAATGGATATTCTGAGGTAGATGCTTTGATGGGTAAGACGGGGCAACTCCAAGAGGAAGAGACAAATATTAATCATAGATCTATAGAAGATGATGATGTTCATGGTAATTTGAATCATGTCTCTGATGCTGTCAAACTGGAGGAAGTTCAGGTTTCTGCCGAACATGCAGCTAAAGATGCTTCTTTGTGTTTGATTGAGGGAAAGGAAGGCAATGATGACAAAAATACTGCAGCAGCTATTGATTCTCTAAAGATTTCTAATGCTATTGTTAGGGATTGTGATTCTGTTTCTTTGGAGGACAAGCAAACAGATTGTCCTTCTGAAGCTGATTTTGCCATAGTTCATGAATACCAAGATGATCCAGGAAGTCCAATCAAACAAGGAAGTGGCCGGAGGAAAAGAAGAAAAGTATCGGATAATCTAAAAGCCACCCCAGAGACGGTTTTAAGGAGGAGTTCTCGCCGTGCATCAGCTAAAAAACAGGTTTCAAGCACCATATCAGTGCAGGTGACTGATGATCCTTTGTTGTCCTTGGGAACCAGTGCCTTAACAGAAGAAAAACCTTTAATGCCTGGTTCTGAGAAATCTGAACAATGCAATGTTCCTCTTCCGAAGCTGCAATTACCCCCTTCTTCTCAAAGTTTGAATTTAGATGATGTTCCTGTTCTTGAACTTTTTTCTGTTTATGCCTGTTTAAGATCATTCAGTACTTTATTGTTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCAATAAAGTCTGAAAGCCCAACTATGTTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTTAGAAAGCATTTGGAACACCTTTCCAATGAGGGTAGCCAATCTGCATCCAATTGCCTGAGGAATGTTAACTGGGATTTCTTGGACCTGGTCACATGGCCCATTTTCATGGCCGAGTACCTTCTGATTCATGCTTCAGGGTTTAAAACTGGATTTGATCTTAACCACTTAATGTTTAGAACTGACTACTACAAACAACCTGTAGTTTTGAAGGTTGAGATTCTTCAGTACCTGTGTGATGAGATGATTGAAGCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGACCGGTATGGGATTTGATCAGAATGTTTATTTTGACACTTGCAAAAAAAGAAGAGCTGTAGTGGATGTTTCTGGTGGCTCTTACTTGACTGAAGAGATTGTAGATGACCCAACTGACTGGAACAGTGATGAATGCTGCCTTTGCAAAATGGATGGGAATTTAATATGCTGTGACGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTGGGCATTGCAAGTGACAATCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTACAATTGGCACACACAAGGCTTGGATGAAATCACAAAGGTCACTCCGAGGAGGAGACTTGTTAGGGATTGATCTTCATGGCCGTCTTTATTTTAACAGCTGTGGTTACTTGTTAGTATCAAACTCATCTGATCCAGGATCTTCATTCAATTACTACCACAGAAATGATCTACATGTTGTCATTGAAGTTCTAAAGTCTATGGATTCTTCATATGGAGCCATATTAATGGCTATCTACAAGCATTGGGATATCCCTACTGAAGTAAGTGTGGGGGCCAGTAACTTGGTAGTCTTAAATCAAAGTTCCTGCAGGGACAAGCAGACGACAGGTGAATATTCTGCTGTGCATACATCTTTAGCACCTTTTACTTCTTCAGAAACTTGTATGGATAAGAATCAGGCTGATGATCAAAGAAAGATGGATGAAAATTCAACAATTCACTGTAATACTAATCATGGGCAAGAATTTCCAAAAGCCGGGAACCGCTTAGACTCAATGACAACTATAGAAAGTGCTTGTATTGCTTCAGAAGGATCAGCCAATACCACACAAATGAAATCAGGCATTGAGAATGTTCAAATGCATGGGCTTTATGATTCCAATAGATCTGATGAATCCTTGAATCTGTCAGGAGTACCAGAAAAAAACTGTCCCGTTGGTGGCTGTTCTTTGACATCTTCCAGCTTAGATGTGGGACATAAAATAAGCTTAAGATCTGTAGGTGCTAGCAGTACCCCCTGCGTGGACAATAAGGATACGTCAGAAGCAACTTGTTGTGGGGTTAACTACATAAACTACTACAGCTTTGCCCGGGTGGCCTCATTAGTTGCACAAGAGTTGATGTGTAAGTTACCTGAAAAGATCAACAAGAATATTGCAATGTCTGAAGAAGAAATAATTTCAGACCAAGCAAAAGCCATTATGAAGAAATCTACCAACTTTTGTTGGCCAAGTATTCAAAACCAGAATGCAGCTGTACAAAAGGAAAAATGTGGGTGGTGCTTTGCTTGCAAAGTTGCAAATGATGACAGAGAATGTGTGTTCAATTCTGTGGTGAAGCCTGTTCGGGAAGTGTCTAAAAGTAGTTCAGCTGGGCTTCAACCCAGGAAGATCCAGCATGGACATCTTAGAGAGATCATATGTCTTATTTTCTCCCTTGAGGTTCGATTACGTGGGCTACTGTTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATAAGGATCTTTTGAAGACATCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTTTTGGAATCCAATTTGAGGCCTCTTGCACTTTCAGCAGATTGGTTAAAGCCTGTGGATTCTGTTGTTACTATGGGATCAGCTACTCATATTGTGGTCAGTTCATCACGCACATATTCAAGGCATGGTATTGGAAGGAAAAGGGCTAGGTATTCAGATATTGAATCCAGTTCATCTTCAAACACTAATGGTGGTTTGGGAATGTTTTGGTGGAGGGGTGGTAGGCTTTCTCGAAAATTGTTTAATTGGAAGGCTTTACCTCGCTCCTTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCAAGGAGAAGCAGATATGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCATACATAAGATGGCATGATATTGAGAATAGCCATCCCCTGTATGTGTTGGACAAGGAATCTAGAAAATCAGGTAGGCTGTTCAAAAAAGCAATCGTGCGCAGGAAGAGCACTGATGGTCAATCTGTGAAATATCTTCTTGATTTTGGAAAGAGAAGGGCTGTTCCAGATATTGTTATTAGACATGGTTCTTTGTTGGAACAATCCTCAAGCGACAGGAAAAAATATTGGCTGGATGAGCCTTATGTTCCCTTACATCTTTTAAAGAATTTTGAGGAAAAAAGAATTGTCCGCAAGGCCAATGATAAGAAGCTCGGAAAAATTCTTGAGATTGGTAGAGTAAAGAGGGTTCCTCCTCAACAAAGGGGATTTTCATATTTGTTTTCTAGAATGGAAAGATTTGATTGTCATCAGTGTGGGCATTGCAACAGAGATGTTCCAATCAGGGAAGCTGTGAGTTGCGTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCTGGTGGCACAAGGACTACTGAATGCACATATTCATGTCACAAATGCCAGGGTGGGTTGCGTGTAAAGACTAATACTAATAGAAGGAAAGTTGACTCAAAACTGCAGAAGATTAAATCGCAGAAAAGTAAAAATGTCTCTTTAGTGTGTAAATCAGTGAACCTTAAAGGCAGTAAAAAGGCATCAAGTAAGGTGCGGCAGGTGGCATCTCGTACCAATAAGAAGATCCAAGCGATTGTACCTCTTCGTCGTTCTACTAGGAAGGCAAAATCCCTGTATATGCAAAGTCAAATGATTGGAGGACGTAAAAAAGGAACGCAGAGTAAAAAGAGTGTAGGACGTAAAAAAGGAAAACAAAATAAATCCAAGAAGGTAACCTCTCAGAAGCCGAAGGAAACTACTATTCAACGGAAGAAGTTGGCAGTAACTGCTGCATGTAAACAAAGAACGAAAATCTGTAACAGTTACTGGCTTAATGGTCTTCGGTTGTCTAGAAAGCCAAATGATGAACGTGTAATGCTGTTTAAAGAGAAAAAGCATGTTGTCTCCTCCAAAGATTTTTCTGGCTCCCTTGATCTGCCTAAATGCTGCCTTTGTTGTGGAGATGGATGCACTTTAAATTATATTGCTTGTGAAATATGCGGAGACTGGTTTCATGGGGATGCTTTCGGACTCAGTGTAGAAAAGGCCAAACAACTTATTGGATTTAAGTGCCATGTATGTCGTGATAGGCCTGCTCCAATCTGCCCCCATATCAAGAGTAACGCATTGTCTCACACTGAAAGCAATGCTGCAATTGAGTGCGCAGAGGAATTATCTAATCCTGTATCTCTCCAACCTTTGAGTGAGATCCCTTGCAATTAA 5190 0.4154 MEFVGKSVKKEVKGAGIVSGTVKSYDPSSGFFEILYEDGDSEELESSDVASLLEFQPELAKAKPRVGRKPKKRRRVERKRETTTVSGNASEDLVGEGSEFSGVLGGDASAGELGSGFERDLGVGNGNGGNLIGNVNGSVSEETMRNEIGFEENLNRSVSANGNCVKDGLDLNAGLNLNEDINLNDVCGSPFDIGGSLKRRDCIDLNLDVSNEDDVNAGGETLQRECKFDLNVEVCEEMKEVQGDDYGNGYSEVDALMGKTGQLQEEETNINHRSIEDDDVHGNLNHVSDAVKLEEVQVSAEHAAKDASLCLIEGKEGNDDKNTAAAIDSLKISNAIVRDCDSVSLEDKQTDCPSEADFAIVHEYQDDPGSPIKQGSGRRKRRKVSDNLKATPETVLRRSSRRASAKKQVSSTISVQVTDDPLLSLGTSALTEEKPLMPGSEKSEQCNVPLPKLQLPPSSQSLNLDDVPVLELFSVYACLRSFSTLLFLSPFELEDLVAAIKSESPTMLFDSIHVSILQTLRKHLEHLSNEGSQSASNCLRNVNWDFLDLVTWPIFMAEYLLIHASGFKTGFDLNHLMFRTDYYKQPVVLKVEILQYLCDEMIEAEAIRSELNRRSLVTETGMGFDQNVYFDTCKKRRAVVDVSGGSYLTEEIVDDPTDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGIASDNLPEGDWYCPECTIGTHKAWMKSQRSLRGGDLLGIDLHGRLYFNSCGYLLVSNSSDPGSSFNYYHRNDLHVVIEVLKSMDSSYGAILMAIYKHWDIPTEVSVGASNLVVLNQSSCRDKQTTGEYSAVHTSLAPFTSSETCMDKNQADDQRKMDENSTIHCNTNHGQEFPKAGNRLDSMTTIESACIASEGSANTTQMKSGIENVQMHGLYDSNRSDESLNLSGVPEKNCPVGGCSLTSSSLDVGHKISLRSVGASSTPCVDNKDTSEATCCGVNYINYYSFARVASLVAQELMCKLPEKINKNIAMSEEEIISDQAKAIMKKSTNFCWPSIQNQNAAVQKEKCGWCFACKVANDDRECVFNSVVKPVREVSKSSSAGLQPRKIQHGHLREIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKTSDFLPVKRLLLLLESNLRPLALSADWLKPVDSVVTMGSATHIVVSSSRTYSRHGIGRKRARYSDIESSSSSNTNGGLGMFWWRGGRLSRKLFNWKALPRSLVTKAARQAGCTKIPGILYPENSDFARRSRYVAWRAAVEMSTSVEQLALQVRELYSYIRWHDIENSHPLYVLDKESRKSGRLFKKAIVRRKSTDGQSVKYLLDFGKRRAVPDIVIRHGSLLEQSSSDRKKYWLDEPYVPLHLLKNFEEKRIVRKANDKKLGKILEIGRVKRVPPQQRGFSYLFSRMERFDCHQCGHCNRDVPIREAVSCVHCKGYFHKRHVRKSGGTRTTECTYSCHKCQGGLRVKTNTNRRKVDSKLQKIKSQKSKNVSLVCKSVNLKGSKKASSKVRQVASRTNKKIQAIVPLRRSTRKAKSLYMQSQMIGGRKKGTQSKKSVGRKKGKQNKSKKVTSQKPKETTIQRKKLAVTAACKQRTKICNSYWLNGLRLSRKPNDERVMLFKEKKHVVSSKDFSGSLDLPKCCLCCGDGCTLNYIACEICGDWFHGDAFGLSVEKAKQLIGFKCHVCRDRPAPICPHIKSNALSHTESNAAIECAEELSNPVSLQPLSEIPCN. 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00469 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1632 1690 IPR013083 -
Seca5g00469 1729 MobiDBLite consensus disorder prediction 61 92 - -
Seca5g00469 1729 SMART PHD_3 1638 1684 IPR001965 -
Seca5g00469 1729 SMART PHD_3 663 706 IPR001965 -
Seca5g00469 1729 SMART testlast3 466 526 IPR018501 -
Seca5g00469 1729 ProSiteProfiles DDT domain profile. 466 526 IPR018501 -
Seca5g00469 1729 PANTHER PHD FINGER FAMILY PROTEIN 2 1689 - -
Seca5g00469 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 722 IPR013083 -
Seca5g00469 1729 SUPERFAMILY FYVE/PHD zinc finger 1636 1690 IPR011011 -
Seca5g00469 1729 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 579 612 IPR028942 -
Seca5g00469 1729 Pfam DDT domain 470 522 IPR018501 -
Seca5g00469 1729 SUPERFAMILY FYVE/PHD zinc finger 650 715 IPR011011 -
Seca5g00469 1729 Pfam PHD-finger 664 706 IPR019787 -
Seca5g00469 1729 CDD PHD1_AIRE 663 705 - -
Seca5g00469 1729 MobiDBLite consensus disorder prediction 1528 1576 - -
Seca5g00469 1729 MobiDBLite consensus disorder prediction 1549 1566 - -
Seca5g00469 1729 ProSitePatterns Zinc finger PHD-type signature. 664 705 IPR019786 -
Seca5g00469 1729 MobiDBLite consensus disorder prediction 362 410 - -
Seca5g00469 1729 ProSiteProfiles Zinc finger PHD-type profile. 661 708 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00469 Seca-Chr5 10219304 10241479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00469 1 1696 PHD Transcription Factor Family AT5G12400 40.901 0.0 1130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca5g00469 DDT 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00469 - - gmx:100800973 2508.79