Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00466 ATGGAACCAGTGCAGCCAGCTTCGAGAGGAGCAGAAGCACTTAAACATATGTCTCCTGGATCAACAATTTCTATTGCATACCACCCTCTTTTTGGACCTCATGATGACCTCATCTTTCTAGAGCTTGATGAGAAACTTCTCCAAGATGTTCTGCATGAGAGGGTGGTCTTAAGGGGACAGCCTGACGAAGATGCAGTACTTTGTACTCAATCCAAAACATATGCTATGAAGTTTGTTGGAACTTCCAATTCTGTTTTGCTTGTACCACCAGCTAATCTATCAGAATCTTATGAAAATCCACAAAAGAATGGTAGTAATAATTATGATGAGAAAGTTGTTGCACCTGTAATCAAAGTTGTACCTGGTAATATGGAGCTTATTGAGGTTGCTCCCAGGCTTGACAAAGTTAAATTGCTTCTTTCAGAGAACCCTTACAGGTTTGAGGAGTATGACATGGAAAATATAGAAGAGAATCAGGAATCTAAAACAGGATTATATAACTGGAATGATCTTAGAGACAATATTCAAGCTAGTGATGAGGAATTAAGGTCTGGGCTGCAGGCTCTTTCAGCTGTGGAGATTAATGGATATTGGAGATTAGTAGATGATAGTTACATGGACATGATTCTGGGAATGCTTTTGAGAAATTCAGTGTTGAATGACTGGTCACTTACTGCTCTTAATGAAGATGAAGTTATCAGTATGCTGGAATCAGATGGATTTCCTGGGGTACTTGCAAGGCATTGTTTGCATGTATATGGGAAGAAAGCAAATGATTGCATGAACACCTGTGTCTGGAAGTTGGATGAGAAACGGGTATGCATACACTTTGCAAGAGAAATCCTTAAAGGAGGTAAGAAGAAGTTAGAGAATTTTATGGATGAATGGAGGCAGAAGACTCCAGATGGAATGCAGCCCACACTTGATCTTATGGAAGGAGAGGTGTTGACAGAGAGAGTTGGAGTTGAGACATGGGTTCGTGCCTTCAGTGTATCTTCGTTGCCTTCCACTCCAGCTGAACGTTTCTCCATTCTTTTCAGAGAGCGGCCAAAATGGGAATGGAAAGATCTGCAGCCCTTTATCAGAGATCTGAATGTACCGGGTCTTTCTTCAGAAGGTTTGCTACTCAAATACACTCGAAAGACACAACCATCACCTGATATGGAGCCAGTTTTCAGTGCAAGATAG 1188 0.4116 MEPVQPASRGAEALKHMSPGSTISIAYHPLFGPHDDLIFLELDEKLLQDVLHERVVLRGQPDEDAVLCTQSKTYAMKFVGTSNSVLLVPPANLSESYENPQKNGSNNYDEKVVAPVIKVVPGNMELIEVAPRLDKVKLLLSENPYRFEEYDMENIEENQESKTGLYNWNDLRDNIQASDEELRSGLQALSAVEINGYWRLVDDSYMDMILGMLLRNSVLNDWSLTALNEDEVISMLESDGFPGVLARHCLHVYGKKANDCMNTCVWKLDEKRVCIHFAREILKGGKKKLENFMDEWRQKTPDGMQPTLDLMEGEVLTERVGVETWVRAFSVSSLPSTPAERFSILFRERPKWEWKDLQPFIRDLNVPGLSSEGLLLKYTRKTQPSPDMEPVFSAR. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00466 395 Pfam Sister chromatid cohesion protein Dcc1 39 361 IPR019128 GO:0007064|GO:0031390
Seca5g00466 395 PANTHER SISTER CHROMATID COHESION PROTEIN DCC1-RELATED 10 395 IPR019128 GO:0007064|GO:0031390
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00466 Seca-Chr5 10151699 10154693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00466 10 395 C3H Transcription Factor Family AT2G44580 54.592 1.37e-157 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00466 K11271 - gmx:100817511 669.848