Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00431 ATGGAGATAGAAGCAGCCAGTGGAAGCAACAAAGGCGGTAGCTGGGGTGCTACTGAAAGTGAGGCACCATATGGTGGCTTTGATAGGGGAAGCTTCTTGGCTTGGGAAGATCTAAGAGTGGTGATACCAAACTTTGGGAAAGGACCAACCAAAAGGTTGCTTAATGGGCTTAATGGGTATGCTGAGCCTGGTAGAATCATGGCTATTATGGGTCCTTCTGGCTCTGGAAAATCAACTCTCCTTGATTCCCTAGCAGGTAGACTCTCAAAAAATGTGGTCATGACAGGAAATGTTCTTCTGAATGGGAAGAAAAAAACCCCGGGCTATGGCTTTGTTGCTTATGTGACTCAAGAGGATGTGTTGATGGGAACTCTTACTGTGAAGGAAACCATAACATATTCAGCATATCTTCGTCTTCCAACTACAATGAGCAAAGAAGAAGTTAGTAGCATTGTGGATGGAACAATCATAGAAATGGGTCTCCAAGATTGTGCTGATAGGTTGATTGGTAACTGGCACTTGAGAGGTATAAGCGGAGGAGAGAAGAAAAGACTTAGCATTGCACTTGAGATCCTTACAAGGCCTCGCTTACTTTTCCTTGATGAACCAACCAGTGGCCTAGATAGTGCCTCAGCATTTTTTGTTGTTCAAACTCTTAGAAATGTTGCTCGTGATGGAAGGACAGTTATCTCTTCCATTCACCAGCCAAGCAGTGAAGTTTTTGCTCTCTTTGATGACCTTTTCTTGCTATCTGGTGGTGAAACAGTTTATTTTGGAGAAGCAAAAATGGCTGTAGAGTTTTTTGCTGAAGCTGGTTTTCCTTGTCCACGGAAAAGAAATCCTTCTGATCACTTCCTGCGATGCATCAATTCTGACTTTGACATTGTAACAGCTACACTTAAGGGATCTCAAAGAATTCCTGATGTTCCAAATTCAGCAGATCCTTTCATAAATTTGGCTACAGCAGAGATCAAGGCAAGGCTAGTTGAGAAATATAGGCGCTCTACATATGCCAGAAGGGCCAAAAACAAGATTCAAGAAATATCTGCCCATGAAGGGCTTGAAACAGAGGCAAAGAATGGAAGTCAAGCTAGTTGGTGGAAGCAACTCTCAACACTGACAAGGAGATCATTTGTCAACATGTGTAGGGATGTGGGTTACTACTGGTTGAGGATTATAATTTACATCATTGTATCTGTATGTGTTGGAACTATTTACTTTGACATTGGCTATAGCTATACTTCAATCCTGGCCCGTGGTGCCTGTGGTGCATTTATCTCAGGATTCATGACATTCATGTCAATTGGAGGCTTTCCATCATTTATTGAAGAAATGAAGGTATTTTATAGAGAAAGGCTTAATGGATATTATGGAGTAGCAGCATATATTATATCAAACTTCCTTTCATCTTTCCCATTCTTGGTTGCTGTTGCTCTTACAACTAGCACCATCACTTATAACATGGTGAAATTCAGGCCAGGATTCATTCATTATGTGTTTTTCACTCTCAACATCTATGGCTGCATCTCAGTGATTGAGAGCCTCATGATGGTTGTAGCTTCACTTGTTCCAAATTTCCTCATGGGAATAATTACAGGAGCTGGAATAATTGGAATCATGATGATGACCTCTGGATTCTTCAGGTTGCTATCTGATCTTCCAAAGCCAGTTTGGCGCTACCCAATTTCATATATCAGTTATGGCGCCTGGGCAATACAGGTAACTTGGTCATGGCTTGTATTTGTCTGA 1749 0.4157 MEIEAASGSNKGGSWGATESEAPYGGFDRGSFLAWEDLRVVIPNFGKGPTKRLLNGLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVLLNGKKKTPGYGFVAYVTQEDVLMGTLTVKETITYSAYLRLPTTMSKEEVSSIVDGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKMAVEFFAEAGFPCPRKRNPSDHFLRCINSDFDIVTATLKGSQRIPDVPNSADPFINLATAEIKARLVEKYRRSTYARRAKNKIQEISAHEGLETEAKNGSQASWWKQLSTLTRRSFVNMCRDVGYYWLRIIIYIIVSVCVGTIYFDIGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYIISNFLSSFPFLVAVALTTSTITYNMVKFRPGFIHYVFFTLNIYGCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWAIQVTWSWLVFV. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00431 582 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Seca5g00431 582 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 277 IPR003439 GO:0005524
Seca5g00431 582 Gene3D - 34 271 IPR027417 -
Seca5g00431 582 FunFam ABC transporter G family member 11 27 271 - -
Seca5g00431 582 Pfam ABC-2 type transporter 369 573 IPR013525 GO:0016020|GO:0140359
Seca5g00431 582 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Seca5g00431 582 CDD ABCG_EPDR 30 259 - -
Seca5g00431 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 266 IPR027417 -
Seca5g00431 582 Pfam ABC-2 type transporter 234 290 IPR043926 GO:0140359
Seca5g00431 582 SMART AAA_5 63 234 IPR003593 GO:0016887
Seca5g00431 582 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 28 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00431 Seca-Chr5 9488570 9497016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00431 37 246 Calmodulin-binding Proteins AT2G36910 29.279 2.99e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00431 K05681 - gmx:100777598 1022.69