Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00430 ATGGAGATCATAGAGCAAGATAATGCCAATGTGATCACCACAGAGGACTATGAAAGGAAAATGATGAGAGGAATGCATCTTGTGTGGGAAGATTTGACTGTTGTAATTCCAAATTTTGGCAATGGACACACAAAGAGATTGCTTAATGGGTTGAGTGGTTATGCTCAACCTAACAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCCACTCTGCTTGATGCTTTGGCAGGTAGACTCTCTCGAAATGTTATCATGTCTGGAAATGTGCTTTTAAATGGAAAGAAAAGGAGATTAGACTATGGAGTTGTGGCTTATGTGACCCAAGAAGACATATTGTTGGGAACACTATCAGTGAGAGAGACAATATCTTACTCAGCAAATCTAAGGCTTCCAGCTACCATGACAAAAGAAGAAATTAATGACATTGTAGAGGGAACAATTATGGAGATGGGTCTTCAAGATTGTGCTGATCGGCTAATAGGGAACTGGCACTTGAGAGGCATAAGTGGTGGAGAAAAGAAAAGACTAAGTATAGCACTTGAAATCCTCACAAGGCCTTGCCTATTGTTCCTTGATGAACCCACAAGTGGTCTAGATAGTGCCTCAGCATATTTTGTTGCCCAAACTTTGAGAAACATAGCTCATGATGGAAAGACTGTTATATCTTCAATACATCAACCAAGTAGTGAGGTTTTTGCACTCTTTGATGATCTCTTTCTGCTTTCTGGGGGTCAAACTATATATTTTGGAGCAGCTGAAAAGGCAGTTGAGTTCTTTGCCAAAGCAGGATTCCCATGTCCAAGTAGAAGAAATCCTTCTGATCATTTCCTCCGTTGCATTAATTCAGACTTCGACACTGTTACCACCACTATGATGGCCTCTCGGAGAATACATGAACAAAAATCATTAGCACCACCGTTAGTGGACATATCAACTGCAGCAATCAAAGCAATACTCATAGAGAAATACCGATGGTCAGAATATGCAACTACTGCAAGAGCAAGAATCAAAGAAATCTCTAACATTGAAGTAGATGATTCTGATGAAAGTAAAAGCAAGAGCCAAGCCAAATGGTGGAAGCAACTATCAACACTAACCCATAGATCATTCCTGAACATGTCTAGAGATGTGGGGTACTACTGGATAAGGATAACAATCTATGTGGCCTTATCTTTGTGTGTGGGAACAATCTTTTATGAAGTTGGATCAAGTTATAGGGCAATCTTTGCAAGAGGAGCATGTGGCGCTTTTATATCAGGTTTCATGACATTCATGTCCATAGGAGGCTTCCCATCCTTCATAGAAGAAATGAAGGTCTTTTACAAAGAAAGGCTCAATGGGTATTATGGAATTGCAGTCTACATTCTATCAAATTTTCTCTCTTCCTTTCCCTTTGTGGCAATGATGTCCATTTCTACTGGGACTATAACCTATTATATGGTTAAGTTTGGTCCTGAGTTTTCACATTTCTTGTATATCTGCTTGGATCTTATCACCTGCATTGCGGTTGTGGAGAGTTCCATGATGATTATAGCTGCACTGGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCAGGATATATTGGTGTTATGATGATGACTTCTGGCTTTTTCCGTCAGATCCCTGATCTTCCCAAATTCTTCTGGCGTTACCCAATTTCATACATCAATTATGGTGCATGGGCATTGCAGGTTAACTAA 1713 0.4016 MEIIEQDNANVITTEDYERKMMRGMHLVWEDLTVVIPNFGNGHTKRLLNGLSGYAQPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVLLNGKKRRLDYGVVAYVTQEDILLGTLSVRETISYSANLRLPATMTKEEINDIVEGTIMEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPCLLFLDEPTSGLDSASAYFVAQTLRNIAHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGAAEKAVEFFAKAGFPCPSRRNPSDHFLRCINSDFDTVTTTMMASRRIHEQKSLAPPLVDISTAAIKAILIEKYRWSEYATTARARIKEISNIEVDDSDESKSKSQAKWWKQLSTLTHRSFLNMSRDVGYYWIRITIYVALSLCVGTIFYEVGSSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERLNGYYGIAVYILSNFLSSFPFVAMMSISTGTITYYMVKFGPEFSHFLYICLDLITCIAVVESSMMIIAALVPNFLMGLIIGAGYIGVMMMTSGFFRQIPDLPKFFWRYPISYINYGAWALQVN. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00430 570 Pfam ABC-2 type transporter 364 568 IPR013525 GO:0016020|GO:0140359
Seca5g00430 570 ProSitePatterns ABC transporters family signature. 171 185 IPR017871 GO:0005524|GO:0016887
Seca5g00430 570 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 19 568 - -
Seca5g00430 570 Pfam ABC transporter 48 199 IPR003439 GO:0005524
Seca5g00430 570 SMART AAA_5 57 256 IPR003593 GO:0016887
Seca5g00430 570 CDD ABCG_EPDR 24 253 - -
Seca5g00430 570 FunFam ABC transporter G family member 11 21 265 - -
Seca5g00430 570 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 271 IPR003439 GO:0005524
Seca5g00430 570 Pfam ABC-2 type transporter 228 291 IPR043926 GO:0140359
Seca5g00430 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 264 IPR027417 -
Seca5g00430 570 Gene3D - 14 266 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00430 Seca-Chr5 9379256 9387107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00430 46 242 Calmodulin-binding Proteins AT2G36910 30.876 3.49e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00430 K05681 - gmx:100788651 967.222