Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00381 ATGATGAGGCTGCAGACATATGCGGGTCTTAGTTTGATAGCTACTCTGGCTATTACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTTTATCTGGCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTCTGGTCATCATGTGTGTTCTGTGGCAGTTGACCAAAAAGGTGTTCCTTGGTTCCCTTAGAGAGGCTGAGGTTGAGAGGCTTAATGAGCAATCGTGGAGGGAGGTTATGGAAATTCTCTTTGCAATTACTATCTTTAGGCAGGACTTTTCTATTACATTCCTTGCCTTGGTTACAGCACTCTTGTTAATCAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATAGAGACCACTCCTTCCGTGCCCATGTTGTCTCAAGTTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTTCTAGATGGCCTCTTTTTGTATAGTTCTGTGAAGCATTTGATACTATCAAGGCAGGCTTCGGTTTCACTCTTCTTTGCTTTTGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAGGAAACCAGTCTTCACGTTTTACCTGGAACTTGTTAGGGACTTGCTTCACTTGTCTATGTATCTCTGCTTCTTTCTTGTAATTTTCATAAACTATGGTGTTCCTTTGCACTTAATAAGGGAGCTGTACGAGACATTTAGGAACTTCAAAATTCGTGTTGCAGACTACATACGTTATCGCAAGATCACTTCTAACATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGTAAGTGATGCAACGTGCATTATCTGTCGTGAAGAGATGACTACTGCTAAGAAACTTATATGCGGACATCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAGAGGCAGCATACTTGCCCTACCTGCAGAGCACTGGTTGTACCACCAGAAAATGGGACAACTGCTGCTGCTGGGGGGCAGCAAGGATCACAGTCCGATGCTCATCGACATGGGACAGGAACTGGAAGCACAGCTCAAGCTGAGGTTGGCAGTGGGATGGCAACTGATAATTTGAATTGGCATCAAGCAAGACTTCAAGCTGCTGCTGCAGCAGCTTCAATATATGAGAAGTCTTATGTTTACCCCTCTGCATCTTTTGCATGGTCCCCTGGTTACACACTTTATCCCCCGTCTCAAAGGTCTGTGGCTGAATCATCTAGTGCTGAGCTTAATGGAGAACAAGCTTCCAGTGAGCAAGCACAAAAGCAGTATGTGATCCCTGGTGGACCAATGAATGTATCCTCTCCTCCAATGCGAAGCTTCTATTTTGTACCTTCTCAAACACATGCAGCTCACATGAACTCTGGGGAGGGGTTTGCAAATGATCCGAATATGCCAAACTCTCAGCTGGAAGCTCAAAGAAAACTCCAGAATGAGATTCTGCAAAATCAGCCCCAGCTTCTGCAGAAGACAAATGTTGAGAAAAGTGTAGATGATGACACATCATTATCAGATAGCAGAGGCAAGCACATCGCTTCCTCTTCATCTGTATCTAGTCATGACTGTCATGAGGAGATTCAAGACAACAGAGCATAA 1656 0.4354 MMRLQTYAGLSLIATLAITYHAFNSRGQFYPAMVYLATSKISLVLLLNMGLVIMCVLWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSITFLALVTALLLIKALHWLAQKRVEYIETTPSVPMLSQVRIVSFMGFLLLLDGLFLYSSVKHLILSRQASVSLFFAFEYMILATTTVSIFVKYIFYVSDMLMEGQWERKPVFTFYLELVRDLLHLSMYLCFFLVIFINYGVPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATPEELNVSDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAAGGQQGSQSDAHRHGTGTGSTAQAEVGSGMATDNLNWHQARLQAAAAAASIYEKSYVYPSASFAWSPGYTLYPPSQRSVAESSSAELNGEQASSEQAQKQYVIPGGPMNVSSPPMRSFYFVPSQTHAAHMNSGEGFANDPNMPNSQLEAQRKLQNEILQNQPQLLQKTNVEKSVDDDTSLSDSRGKHIASSSSVSSHDCHEEIQDNRA. 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00381 551 MobiDBLite consensus disorder prediction 500 551 - -
Seca5g00381 551 MobiDBLite consensus disorder prediction 341 366 - -
Seca5g00381 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Seca5g00381 551 PANTHER RING ZINC FINGER PROTEIN 1 520 - -
Seca5g00381 551 Pfam Ring finger domain 291 330 IPR001841 -
Seca5g00381 551 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Seca5g00381 551 SMART ring_2 292 329 IPR001841 -
Seca5g00381 551 SUPERFAMILY RING/U-box 272 336 - -
Seca5g00381 551 CDD RING-H2_synoviolin 289 330 - -
Seca5g00381 551 MobiDBLite consensus disorder prediction 340 366 - -
Seca5g00381 551 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00381 Seca-Chr5 8039722 8046327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00381 1 535 C3H Transcription Factor Family AT3G16090 63.787 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00381 K10601 - gmx:100816441 858.981