Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00377 ATGGCTTACATGTGTGCAGATAATGGGAACCTTATGGCGATTGCCCAACAAGTGATCAAGCAAAAACAGCAACAAGAGCAAGAACAACAACAACAACAGCAACAACATCATCAACAGTTGTTGGGTATTAACCCTCTCTCTCTCTCCCATCCATGGAACAACATTCACACCACTACCACTGCTACTTCTCCTATTCCACCTCACTTGGGTTTCCCTCTTCCCCTTCCTCCCACCGATTTCACCGACCCTTTTCAAGTCGGGTCGGGTCCTGATAACCCTGATCCAGGTTTCCAGTTCCCTCCTCCTCTCGACCCTCATTCCGCCGCCTTCCGATTCTCCGATTTCGACAACGATGACTGGATGGACACCTTGATAGCCGGCGCTGACTCTCTCAATCTCCCCCCTCCACCTCCTCCTGATTTCTCCCTCAACCCGTTTTCATCCTGCCCGACCCGACTCTCCCCTCCTTCGGATCTCAACCGGGTCATCTTCCCTTCCTCCTCTGAATCCCACTCTCAGCCTCAGCCTCACACCACCGCTGCTACCGCTTTTCAACTCCCCACCCTAACACCCACTGTCCCCAAAAACCCTCCACCACCAGCGAAACCCACTCCCCACCGAAACGACGCATCCGAAACGACGCCGTCGTCTCTGCATCCGCTTCTGAAAGCGTTAACGGAGTGTGCTCGCCTCGCTGAAACCGAACCGGATCAAGCCTCAGAATCTCTGACCCATCTCACAAAATCTGTGTCACAACATGGCAACCCTACTCAAAGGGTCGCGTTTTACTTCTCCCAAGCTCTAACCAACAAAATATCAGCAGAGAGAGAGAGAGAGAAGAACTTGCCAATGGTGGAACCTACTAGTAACACCACTACTACTTCTGAAGAGTTGATACTCTCTTACAAAGCTCTAAATGATGCTTGCCCTTATTCCAAGTTTGCACATTTCACTGCAAACCAAGCTATTTTGGAAGCCACTGAAGGAGCCACAAAGATTCACATAGTTGATTTTGGGATTGTGCAAGGGATTCAGTGGGCTGCACTGTTGCAAGCATTTGCTACTCGCTCTTCTGGGAAGCCTCATAGCATAAGGATCTCTGGGATACCTGCTATGGCTCTTGGAACTTCACCTGGAGCTTCTCTCTCTGCCACTGGGAACCGTTTATCTGAGTTTGCAAAGCTTCTTGGCTTGAATTTTGAGTTTACACCCATTCTCACACCTATTCACCAGCTTAATGAGTCTAGCTTTTGCATTGAACCAAACGAGGCCTTGGCTGTGAACTTCATGCTTCAGCTGTACAACCTTTTGGATGAGACTCCAACTGCAGTGGAGACTGCACTTCGTTTGGCTAAATCTTTGAACCCCAGAATTGTGACTCTTGGGGAGTATGAAGCAAGCTTGACAAGTGTTGGCTTTTTCAACAGGTTCAAGACTGCATTGAAGTATTTCTCTGCTTTGTTTGAGTCTCTGGAGCCAAACATGGCTCTAGACTCACCAGAGAGGTTTCAGGTGGAGAGTCTTCTGCTTGGCCGGAGAATCGCCGGCGTGATTGGGCCGGAGTTGCCGGGGAGTGTGAGGGAAAGGATGGAGGACAAAGAACAGTGGAGGGTTCTGATGGAAAGTTGTGGTTTTGAATCAGTGAGTCTCAGCCATTATGCAATTAGTCAAGCTAAGATACTTTTGTGGAATTACAGTTACAGTTCTCTTTACTCACTTGTTGAATCTCAACCGGGGTTTTTGTCTCTGGCTTGGAAAGATGTCCCTCTATTGACTGTTTCTTCATGGCGTTAA 1794 0.4877 MAYMCADNGNLMAIAQQVIKQKQQQEQEQQQQQQQHHQQLLGINPLSLSHPWNNIHTTTTATSPIPPHLGFPLPLPPTDFTDPFQVGSGPDNPDPGFQFPPPLDPHSAAFRFSDFDNDDWMDTLIAGADSLNLPPPPPPDFSLNPFSSCPTRLSPPSDLNRVIFPSSSESHSQPQPHTTAATAFQLPTLTPTVPKNPPPPAKPTPHRNDASETTPSSLHPLLKALTECARLAETEPDQASESLTHLTKSVSQHGNPTQRVAFYFSQALTNKISAEREREKNLPMVEPTSNTTTTSEELILSYKALNDACPYSKFAHFTANQAILEATEGATKIHIVDFGIVQGIQWAALLQAFATRSSGKPHSIRISGIPAMALGTSPGASLSATGNRLSEFAKLLGLNFEFTPILTPIHQLNESSFCIEPNEALAVNFMLQLYNLLDETPTAVETALRLAKSLNPRIVTLGEYEASLTSVGFFNRFKTALKYFSALFESLEPNMALDSPERFQVESLLLGRRIAGVIGPELPGSVRERMEDKEQWRVLMESCGFESVSLSHYAISQAKILLWNYSYSSLYSLVESQPGFLSLAWKDVPLLTVSSWR. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00377 597 MobiDBLite consensus disorder prediction 188 218 - -
Seca5g00377 597 Coils Coil 12 40 - -
Seca5g00377 597 MobiDBLite consensus disorder prediction 128 154 - -
Seca5g00377 597 ProSiteProfiles GRAS family profile. 212 597 IPR005202 -
Seca5g00377 597 MobiDBLite consensus disorder prediction 191 205 - -
Seca5g00377 597 Pfam GRAS domain family 222 597 IPR005202 -
Seca5g00377 597 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 181 592 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00377 Seca-Chr5 7979462 7982045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00377 1 597 GRAS Transcription Factor Family AT5G66770 57.581 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca5g00377 GRAS 1.2e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00377 - - adu:107477343 746.503