Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00374 ATGTATTTGATTCAACAGACAGAGCGTCTTGGACTCAGAAATAGAATTGAAAAGAAAGCAGCCTATCTGCAGGAGCTTGAGGATCAATTCGTAGGTCTTCAAAATCTTATTCAACGAAATGAGCAATTATATAGCTCAGGAAATCCTCCCAGCGGAGGTGTATCGTTACCGTTTATTCTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCCTTTGAGCTGCATGATGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAGTGATAATATGACACACAATCCTACTGATGGAGGGGAAGGTTCTAGCATGTCAGGATTGTATCAACCGCAGGTTCCTCCTTCAGGTTCAAACGTGTCAGTTCGGCCTCCCACATCACCTCCGCTCCCTGGAATATTAAAGGCAAGAGTTAAGCAGGAGCATTGA 489 0.4233 MYLIQQTERLGLRNRIEKKAAYLQELEDQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDNMTHNPTDGGEGSSMSGLYQPQVPPSGSNVSVRPPTSPPLPGILKARVKQEH. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00374 162 Pfam Transcription factor DP 7 116 IPR014889 -
Seca5g00374 162 Gene3D Transcription factor DP 4 122 IPR038168 -
Seca5g00374 162 FunFam Transcription factor-like protein DPB 4 123 - -
Seca5g00374 162 MobiDBLite consensus disorder prediction 108 140 - -
Seca5g00374 162 SUPERFAMILY E2F-DP heterodimerization region 6 116 IPR037241 -
Seca5g00374 162 PANTHER TRANSCRIPTION FACTOR DP 6 117 IPR015648 GO:0005667|GO:0051726
Seca5g00374 162 CDD DP_DD 6 101 IPR014889 -
Seca5g00374 162 SMART DP_2 6 160 IPR014889 -
Seca5g00374 162 MobiDBLite consensus disorder prediction 107 162 - -
Seca5g00374 162 Coils Coil 9 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00374 Seca-Chr5 7803296 7805467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00374 6 111 E2F-DP Transcription Factor Family AT5G02470 49.057 6.55e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00374 K04683 - gmx:100800599 283.108