Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00373 ATGGATGCCCAAAAGAATCATCAAAATGTTGTGACCGTAGATGTCCATTGTGCCAAAGATTTGCTCAATTCATCCGGTTATTGTTATTTAGATGTGAGGACAGTAAAGGAATTCAGCAACAGCCATGTTGAGAATGCTCATAATGTCCCCTATATGTTCATCATGGAAGCAGGATGGGTGAAAAATCCTGATTTTGTTAGCCAGGTAGCAGCAATATGCAAGAAAGAGGATCACTTAATTGTGGCAAGAAATCTATATATAGCCTTCAATTCTCTAAAATATATATAA 288 0.3681 MDAQKNHQNVVTVDVHCAKDLLNSSGYCYLDVRTVKEFSNSHVENAHNVPYMFIMEAGWVKNPDFVSQVAAICKKEDHLIVARNLYIAFNSLKYI. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00373 95 CDD RHOD 18 74 - -
Seca5g00373 95 ProSiteProfiles Rhodanese domain profile. 23 81 IPR001763 -
Seca5g00373 95 Gene3D - 1 85 IPR036873 -
Seca5g00373 95 PANTHER THIOSULFATE SULFURTRANSFERASE 18 3 82 IPR044684 GO:0003824
Seca5g00373 95 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 8 81 IPR036873 -
Seca5g00373 95 Pfam Rhodanese-like domain 18 81 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00373 Seca-Chr5 7779343 7780884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00373 8 82 Sulfurtransferasese or Rhodanese AT5G66170 45.455 5.53e-15 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00373 K22547 - gmx:100794624 141.739