Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00367 ATGATGTCAGAAGCTACTTCAGTGGACACCCAACAAAGCACAGAGTTCCTTGTGCCCAAAACCACGACGAGGCTAAACCTGTCAAATTCCCAAACTACCCACATCTTTAGATCAAAATTACCAGACATATCCATCCCAAACAACATCCCACTCCACACCTATTGCTTCCAAAAACTCCCCGAAGTCGCCGACCGGCCATGCCTCATCGTCGGCGGCTCCGCCGGCAGAACCTACACCTACGCCGAAACTCACCTCGCATGTCGAAAATTCGCCGCCGGTCTCTCCAATCTCGGCATTAAAAAAGGCGACGTCATCATGATCCTTCTCCCAAACTGTCCCGAGTTCGTCTTCTCCTTCATGGCGGCCTCCATGCTCGGCGCCGTCGCCACCACCGCCAATCCATTCTACACCGCCGCCGAAATCTCAAAGCAACTCACCGCTTCCAAAGCCAAACTCGTCGTCACTCTGTCCACGTACGTCGGGAAGCTTCCCGAAACAGGGGAAGATCTGAAGGCGGTTATCACCGTCGATGCACCGCAGAAGAACTGTTTGAGTTTCTCGGCGGTTTCGGAGGCGTCGGAGGAGAGTGGAGTTCCGGAGGCGGAGATAGCGGCGGAGGATGCGGTGGCGTTGCCGTTCTCGTCAGGGACGACGGGGCTAGCGAAGGGAGTGGTTCTGACGCATAAGAATTTGGTAACGAGCGTGGCTCAGCAAGTTGACGGAGAAAACCCAAACCTGTACATGAGGGAAAACGACGTCGTGCTATGCGTGCTTCCGTTGTTTCACGTATTCTCAATGCACACGGTGATGATGTGTGCGCTGAGAAGAGGGAGCGCGATATTAGTGGTAGAGAAATTTGAGATAGGGGCGTTGATGGAGATGATAGAGAAGCATAAGGTGTCGGTGGCGATGGTGGTGCCGCCGTTGGTGCTGGCTCTCGCTAAGAACCCAAAGGTGGGGGAATATGACCTAACCTCCATACGGTTAGTCATGTCAGGTGCTGCGCCTCTCGGGAAGGAGCTCGAAGATGCTCTCAGCAGCAGGTTGCCTCAGGCAGTTTTAGGACAGGGGTATGGGATGACAGAGGCTGGGCCGGTGTTGGCCACGTGTTTGGGGTTTGCAAAGGAGCCATTCCCATCGAAGTCAGGGTCGTGTGGCACTGTGGTGAGAAATGCAGAGTTGAAGGTCATTGACCCTGAAACTGGTTCTTCTCTTCCCCGTAACTACCCCGGTGAGATTTGCATCCGAGGCCAACAGATCATGAAAGGATACCTGAATGATGAGAAGGCGACTGCAACAACTATTGATGTAGATGGATGGCTTCATACTGGTGATATAGGATACGTAGATGATGATGATGAGATTTTCATCGTTGACAGGGTCAAGGAACTCATCAAATTCAAAGGCTTCCAGGTGCCGCCGGCAGAACTTGAAAACCTTCTTATAAACCACCCTTCCATTGCAGACGCAGCTGTTGTGCCCCAAAAGGATGATGTTGCGGGTGAGGTTCCAGTGGCTTTCGTTGTTAGCTTTGATCTTACTGAAGAGGCTGTAAAGGAGTTTATAGCAAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTGTACTTTGTTCATGCAATTCCAAAGTCTCCATCCGGAAAGATATTAAGAAAAGAACTCAGAGCAAAGCTCGCAAGGATCACCCAGACGGCATAA 1698 0.5147 MMSEATSVDTQQSTEFLVPKTTTRLNLSNSQTTHIFRSKLPDISIPNNIPLHTYCFQKLPEVADRPCLIVGGSAGRTYTYAETHLACRKFAAGLSNLGIKKGDVIMILLPNCPEFVFSFMAASMLGAVATTANPFYTAAEISKQLTASKAKLVVTLSTYVGKLPETGEDLKAVITVDAPQKNCLSFSAVSEASEESGVPEAEIAAEDAVALPFSSGTTGLAKGVVLTHKNLVTSVAQQVDGENPNLYMRENDVVLCVLPLFHVFSMHTVMMCALRRGSAILVVEKFEIGALMEMIEKHKVSVAMVVPPLVLALAKNPKVGEYDLTSIRLVMSGAAPLGKELEDALSSRLPQAVLGQGYGMTEAGPVLATCLGFAKEPFPSKSGSCGTVVRNAELKVIDPETGSSLPRNYPGEICIRGQQIMKGYLNDEKATATTIDVDGWLHTGDIGYVDDDDEIFIVDRVKELIKFKGFQVPPAELENLLINHPSIADAAVVPQKDDVAGEVPVAFVVSFDLTEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKELRAKLARITQTA. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00367 565 CDD 4CL 45 554 - -
Seca5g00367 565 Pfam AMP-binding enzyme 63 467 IPR000873 -
Seca5g00367 565 Pfam AMP-binding enzyme C-terminal domain 476 548 IPR025110 -
Seca5g00367 565 SUPERFAMILY Acetyl-CoA synthetase-like 30 560 - -
Seca5g00367 565 ProSitePatterns Putative AMP-binding domain signature. 211 222 IPR020845 -
Seca5g00367 565 Gene3D - 462 561 IPR045851 -
Seca5g00367 565 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 556 - -
Seca5g00367 565 FunFam Long-chain-fatty-acid--CoA ligase FadD 37 462 - -
Seca5g00367 565 Gene3D - 26 461 IPR042099 -
Seca5g00367 565 FunFam 4-coumarate--CoA ligase 2 463 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00367 Seca-Chr5 7750694 7753407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00367 35 493 Monolignol Biosynthesis Gene Families AT3G21240 65.443 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00367 K01904 - gmx:100790396 827.009