Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00361 ATGGCGGCGGGGAACTTGAACAATAACAATAATAATATGGTGCCGCCATTTCTGAGCAAGACGTATGAGATGGTGGATGACTCCTCCACCGACTCCATCGTTTCTTGGGGTCACAACAACAACACCTTCGTTGTTTGGAATGTCACTGAATTCGCCAAACACATCTTGCCCAAATATTTCAAGCACAATAACTTCTCCAGCTTTGTCAGGCAGTTGAATACTTACGGTTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCAAATGAAGGGTTTCTAAGGGGTCAAAAGCAATTGTTGAAGAGTATCAGTAGGCGAAAATCTACTCATGTAAATGGTACTAGTCAACCACAGCCTCAGGTGCAAAGCTCATCTGTTGGGGCATGTGTTGAAGTTGGCAAGTTTGGGCTTGAGGAAGAGATTGAAAGGCTGAAAAGGGATAAGAATGTTCTTATGCAGGAGCTTGTTAGGTTAAGACAACAGCAACAAACGACTGATAACCAATTGCAAAGTGTCGGGCAACGTGTGCAGACAATGGAGCAGCGTCAGCAACAGATGATGTCTTTCTTGGCGAAGGCCATGCATAGTCCGGGCTTCTTGGCTCAGTTTGTGCAGCAGCAAAATGAAAGCAATAGACACATTACAGGAGGTAAAAAAAGGAGGCTCCACAAGCAGGAAGAAGATAGTTTAGCTACCAAACATCAACATAATTCTCTTGATGGACGGGTTGTCAAGTACCAGCCATCAATAAATGAGGCAGCAAAAGCATTACTTTGCCAGATATTGCAAATGAACAATACTACAAGGAAGGAATCATCAATTAAGAACCCTGATGCATACCTTATTGATGATATTCCTTCAGCTGTTGCATTAGATAGCAGTAGCTCGTCCACTCGGGTTTCTGGTGTAACACTTTCTGAGGTTCCACCTATTTCTGGACAATCATGTATGGCAGTAGAATCTCAATTTCCTGTCAGTTGTATGACCAATAGCATATCTGAGGTGCAATCTTCACCTGCTGTGTTGAATGACTGTGTTAATGCAGCTGACTTTCCAGATTTAACAGCACATAATTGCGAAGATAATGCTTTGGATTTTGGTCAAATTCAAGGGATGGGGACAGAGTGCAGCTTCCTGAATCCTGATCAAAATTTTGTGGGGTGTGATACTGGGAACGAGGAGATAGATGTGATATCAAGTGTTTTAGATGGGACACAGTCTGTAGAAGCTGATGCTTTTTCTACTGATGCGGATGGAATTCCTAAACTTCCAGGAATCAATGATGAGTTCTGGGAACAGTTTTTTAGGCCAAGCCCACTTACTGGAGATACAGATGAAGTTAAATGCAGCTCTCTGGGATGTGGGTTGACTGAAGACCAGGAATTATCATCAGAAAAGGAGATTCAACAGGAAAAGATGGATAAGAAACAGCGTATTGACCATCTTACACAACAGATGGGACTTCTTGCATCAGAGTCTTAA 1482 0.4271 MAAGNLNNNNNNMVPPFLSKTYEMVDDSSTDSIVSWGHNNNTFVVWNVTEFAKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKSTHVNGTSQPQPQVQSSSVGACVEVGKFGLEEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQSVGQRVQTMEQRQQQMMSFLAKAMHSPGFLAQFVQQQNESNRHITGGKKRRLHKQEEDSLATKHQHNSLDGRVVKYQPSINEAAKALLCQILQMNNTTRKESSIKNPDAYLIDDIPSAVALDSSSSSTRVSGVTLSEVPPISGQSCMAVESQFPVSCMTNSISEVQSSPAVLNDCVNAADFPDLTAHNCEDNALDFGQIQGMGTECSFLNPDQNFVGCDTGNEEIDVISSVLDGTQSVEADAFSTDADGIPKLPGINDEFWEQFFRPSPLTGDTDEVKCSSLGCGLTEDQELSSEKEIQQEKMDKKQRIDHLTQQMGLLASES. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00361 493 MobiDBLite consensus disorder prediction 220 235 - -
Seca5g00361 493 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Seca5g00361 493 Coils Coil 465 485 - -
Seca5g00361 493 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g00361 493 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g00361 493 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g00361 493 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g00361 493 Coils Coil 134 161 - -
Seca5g00361 493 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g00361 493 MobiDBLite consensus disorder prediction 212 235 - -
Seca5g00361 493 Gene3D - 8 107 IPR036388 -
Seca5g00361 493 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 292 IPR027725 -
Seca5g00361 493 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g00361 493 FunFam Heat shock transcription factor 1 10 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00361 Seca-Chr5 7553028 7559967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00361 12 493 HSF AT5G16820 53.012 4.74e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca5g00361 HSF_DNA-bind 2.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00361 K09419 - gmx:100793665 598.586