Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00358 ATGGTAAACCCAAAAGTGTCCGGTCGGCCAAAGATATGCTACAGGCCTATACGACCTTCTGACCTCAACATTTTAGAGCATATCCATCTCAAACTATTTCCCATCAGATATGAATCTACTTTTTTCCAAGATGTGGTAAATGGATGTGATATTGTGTCATGGGGAGCTGTAGACTCTAATCGGCCTGATGGCCAAAGTGATGAACTTATTGGATTCGTAACAGCACGTATTGTTCTTGCAAGAGAAAGCGAGATAGTAGATATGCTTGGATATGACTCATCCAAATCAAATCAAACTTTAGTTTACATTCTGACACTAGGAGTAGTGGAAGCATATAGAAATCATGGAATTGCCTCTTCTTTGATCAGGGAGGTCATAAAATATGCTCTAAGTATTCCAACATGCCGAGCTGTTTACTTGCACGTAATTTCTTACAATAATCCCGCAATCTTTTTGTACAAGAAAATGTCTTTCAAGTTCGTAAGAAGGCTGCAGGGATTTTATTTAATCAACGGCCAACATTATGATTCTTACCTATTCCTGTACTATGTAAATGGGGGACGATCTCCTTGCTCACCATTGTAA 585 0.3897 MVNPKVSGRPKICYRPIRPSDLNILEHIHLKLFPIRYESTFFQDVVNGCDIVSWGAVDSNRPDGQSDELIGFVTARIVLARESEIVDMLGYDSSKSNQTLVYILTLGVVEAYRNHGIASSLIREVIKYALSIPTCRAVYLHVISYNNPAIFLYKKMSFKFVRRLQGFYLINGQHYDSYLFLYYVNGGRSPCSPL. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00358 194 CDD NAT_SF 77 141 - -
Seca5g00358 194 FunFam Histone acetyltransferase MCC1 isoform A 6 187 - -
Seca5g00358 194 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 12 185 IPR000182 GO:0016747
Seca5g00358 194 PANTHER N-ALPHA-ACETYLTRANSFERASE 60 3 194 IPR045141 GO:0004596
Seca5g00358 194 Gene3D - 5 187 - -
Seca5g00358 194 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 11 184 IPR016181 -
Seca5g00358 194 Pfam Acetyltransferase (GNAT) family 59 158 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00358 Seca-Chr5 7514387 7517113 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca5g00358 Acetyltransf_1 8.7e-13 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00358 K22767 - gmx:100812509 352.829