Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00351 ATGGGGAGAACCCCATGCTGTGATGAGAGTGGTTTGAAGAAGGGTCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTCAGAAAAATGGCCATGGAAGTTGGAGAGCACTTCCAAAGCTTGCAGGACTCAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACTAACTATTTAAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAACAACTCATCATCAATTTACATTCAGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGACATTTGCCAGGGAGGACTGATAATGAAATCAAGAACTTTTGGAACACTCATTTAAAGAAAAAGCTTCTTCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATTGGATCATCTTAATCTTCTATCCAATCTCCAACAATTGCTAGATGCTACAAACATTGTCAATAGTTTGAGTTTAACAAACACTTGGGACATGAATTCTCTGAGGCTGCAATCAGATGCAACACAATTAGCCAAACTCCAATTGCTGCAGAACATGCTTCAAGTCCTTTCTGGTGCCACTACTCCTAACACAAATTTGGAGTTACTCAATCCATTTGGACCATCATCCTCACAGCTTCAAGAAAATTTTCTGCATGAACTTATGGGATTGAATCAATCTAAGCTCCAAAGCCTTTACAATGGTTCAACTAGTTTTCCTTCTCAAAATCAGCCAAATCTTGAAGCCCTGCTTCATCTGCAGCAGCCAGCTCTGTCCACTGAGCATCATCACATGAATGGTAGTGGCAGCAGCATTAGTAGTTGCATGAAGTCTCAAAAGGTTGATGAGAAACTTAATGCCACAATAATGAATTCTTCATCAACACCATTGGATTCACTTCCAAATCTGGTTTCAGCATCACCTGAATGTTCCAAGGTAAAAGTACCAAATGAGTGTTCCAATCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAAGTGATGCTTATTGGAAAGATCTCATAGACCAAGAGTCTAACCAGTAA 1053 0.4074 MGRTPCCDESGLKKGPWTPEEDRILVDYIQKNGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHSVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRLDHLNLLSNLQQLLDATNIVNSLSLTNTWDMNSLRLQSDATQLAKLQLLQNMLQVLSGATTPNTNLELLNPFGPSSSQLQENFLHELMGLNQSKLQSLYNGSTSFPSQNQPNLEALLHLQQPALSTEHHHMNGSGSSISSCMKSQKVDEKLNATIMNSSSTPLDSLPNLVSASPECSKVKVPNECSNPSSTSTTFEMWGDFMYEEVSDAYWKDLIDQESNQ. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00351 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca5g00351 350 FunFam MYB-related transcription factor 13 66 - -
Seca5g00351 350 CDD SANT 69 112 IPR001005 -
Seca5g00351 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca5g00351 350 CDD SANT 16 61 IPR001005 -
Seca5g00351 350 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca5g00351 350 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca5g00351 350 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca5g00351 350 FunFam Transcription factor MYB39 69 130 - -
Seca5g00351 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 269 - -
Seca5g00351 350 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca5g00351 350 Gene3D - 69 116 - -
Seca5g00351 350 SMART sant 66 114 IPR001005 -
Seca5g00351 350 SMART sant 13 63 IPR001005 -
Seca5g00351 350 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca5g00351 350 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00351 Seca-Chr5 7456217 7457965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00351 1 345 MYB Transcription Factor Family AT5G16770 50.270 1.45e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca5g00351 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00351 K09422 - gmx:547488 513.072