Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00342 ATGAGAGATATTTGTAGAAACTTCCAGCGAGGCAGCTGTCAATATGGAGAAAGGTGTAGATATCAACATGTACAACAACAACAGCGAAAATCTAATGTTCATGGGTTTGGAGGACAGAGCAATTCTCACCAACAGCAAAATACTAATCCTTTTGGCTTTGGGTCTCCCTCTGGCTCACACCAACAGCAAAAGACCAATCCTTTTGGTTTTGGTGTTCAGGACAGCTCCCAGTTAAATGGGGGGCCTCATTCTGACTTCAAACAAAACCAATTCAAGCCTTTTGAAAACAAATGGAATCGACTTTCATCTAAACCCCAGGGTGGCGCTTCACGTCAATCTGATAACCATTCTCAATCAGTGAATCATAAATGCACAGATCCTGAGATCTGCAAGCGCCAGATTGCAGAAGATTTTGAGCAAGAGAAACCACTTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCAGCAGCTTATGAAGATGCTAAGAATGGAATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAGTATACTAAAATCCAAGTTGGTTGAGTTTGAGAGACTACTTTCTGAACCCTACAAAATGCCACTGAATTCTTCTCTTGACAGTCAAACGCACCAATCTAGTGGAGCCAATGCAAACCCTTTTCCACTAACCACTCAAAATAATGGTCCTTTATCAGTCTCAAGCTTTAGCCAACTGGGTACTTCATTGAACATGGATTTTCAACGGCCCTCTGCATTGCAAATGAACACTCAGACTGGTCCCTTTGGAAGTGGAGGAAACTCTTTCGCATCCAACACAGCAAACCTATTCGGCAGTGGCAGCTCAGGTGCTCAAAGCAGCCCCTTCTCTACACCAACGGAGTTGACAATGTTTACGGGTCCAACTTCTCAGCAATCATCCGTTGCTTTCAATAACTCTAGCTCCACTACAATGCTTCAGACGTCAGATATTCAGTTGTAA 1014 0.429 MRDICRNFQRGSCQYGERCRYQHVQQQQRKSNVHGFGGQSNSHQQQNTNPFGFGSPSGSHQQQKTNPFGFGVQDSSQLNGGPHSDFKQNQFKPFENKWNRLSSKPQGGASRQSDNHSQSVNHKCTDPEICKRQIAEDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRAAAYEDAKNGMSLQSIVEKERSILKSKLVEFERLLSEPYKMPLNSSLDSQTHQSSGANANPFPLTTQNNGPLSVSSFSQLGTSLNMDFQRPSALQMNTQTGPFGSGGNSFASNTANLFGSGSSGAQSSPFSTPTELTMFTGPTSQQSSVAFNNSSSTTMLQTSDIQL. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00342 337 MobiDBLite consensus disorder prediction 213 240 - -
Seca5g00342 337 Gene3D - 1 68 - -
Seca5g00342 337 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Seca5g00342 337 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Seca5g00342 337 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Seca5g00342 337 SUPERFAMILY CCCH zinc finger 3 28 IPR036855 GO:0046872
Seca5g00342 337 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 4 328 - -
Seca5g00342 337 MobiDBLite consensus disorder prediction 30 124 - -
Seca5g00342 337 MobiDBLite consensus disorder prediction 291 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00342 Seca-Chr5 7328943 7334795 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g00342 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00342 K14321 - gmx:100814339 499.59