Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00339 ATGCAAAAAATCATGGGAGGAGGTGTCAATGAAGAAGAAGGTGGTGTGAGAGAAGAAGAAGAAGAGAACAAATGGCCTCCATGGCTTAAGCCACTTCTGAAGACAAGCTTCTTTGTTCAATGCAAAGTCCACACAGATTCTCACAAGAGTGAATGCAATATGTATTGTTTGGACTGTATGAATGGAGCCCTTTGCTCTGCTTGCTTAGCTTCCCACAAAGAACACAGAACAATTCAGGTAATAAGGAGATCTTCATACCATGATGTGATAAGGGTGTCTGAGATACAGAAATTTCTGGACATAACAGGGGTCCAAACTTACATTATCAACAGTGCCAAGATTGTTTTCTTGAATGAAAGGCCTCAACCTAGGCCTGGAAAAGGGGTCACCAATACTTGCCAAGTCTGTGAGCGCAGCCTCCTTGATTCCTTCAGTTTTTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAGAAGTTCAGGAAGAACAAAATGTTAGGTGAGACAGATGGGTCTGATGGTGAAGAATCAATGAATGGCATCATCATCAGCAGCAATGGAAGTGGCAGAAACAAAATGCATAGCTTCACACCTTCAACTCCACCCCCAACAGTGGTCAATTACAGAACAGCTAAGAGAAGGAAAGGAATTCCACATAGAGCTCCAATGGGGGGAGGAATCATTATACAATATTACTAA 699 0.4235 MQKIMGGGVNEEEGGVREEEEENKWPPWLKPLLKTSFFVQCKVHTDSHKSECNMYCLDCMNGALCSACLASHKEHRTIQVIRRSSYHDVIRVSEIQKFLDITGVQTYIINSAKIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSLGCKIVGTSKKFRKNKMLGETDGSDGEESMNGIIISSNGSGRNKMHSFTPSTPPPTVVNYRTAKRRKGIPHRAPMGGGIIIQYY. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00339 232 Pfam PLATZ transcription factor 82 153 IPR006734 -
Seca5g00339 232 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g00339 232 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 19 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00339 Seca-Chr5 7277341 7279446 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Seca5g00339 PLATZ 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00339 - - gmx:100810757 381.719