Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00333 ATGGCTGCTGCTGCTGACAACACCAACCCAAAGGATTATTACAAAGTGCTGGAGGTTGATTATGACGCAACGGATGAAAATATCAGATTAAGTTACCGAAGACTTGCACTGAAATGGCATCCTGACAAGCACAAGGGTGACAGCGATGTTACTGCAAAATTTCAAGAGATTAATGAAGCTTACAATGTATTGAGTGATCCTGCCAAGCGTTTGGACTATGATTTAACTGGGATATGTGAGATTGACAAGTATAGCTTGCAGGAATATCTTGCTAGATTTAAAGGAATGATTCTTACCTGCAATGGACTTGGCATCAATCATACAGACAGATGGTATTTTTTTTCCCGTCTTTCTATTCTCTCTTATTCTACTGTAGAGGTGGAATTCACCAGCCATAAGTCCTTTGATGTAAGAATAACACTGCCTGTCAATCCACAGAATTCAAAATGA 450 0.3933 MAAAADNTNPKDYYKVLEVDYDATDENIRLSYRRLALKWHPDKHKGDSDVTAKFQEINEAYNVLSDPAKRLDYDLTGICEIDKYSLQEYLARFKGMILTCNGLGINHTDRWYFFSRLSILSYSTVEVEFTSHKSFDVRITLPVNPQNSK. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00333 149 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Seca5g00333 149 Gene3D DnaJ domain 2 90 IPR036869 -
Seca5g00333 149 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 108 - -
Seca5g00333 149 CDD DnaJ 12 66 IPR001623 -
Seca5g00333 149 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Seca5g00333 149 SMART dnaj_3 11 69 IPR001623 -
Seca5g00333 149 Pfam DnaJ domain 12 74 IPR001623 -
Seca5g00333 149 SUPERFAMILY Chaperone J-domain 9 105 IPR036869 -
Seca5g00333 149 PRINTS DnaJ domain signature 14 32 IPR001623 -
Seca5g00333 149 PRINTS DnaJ domain signature 49 69 IPR001623 -
Seca5g00333 149 PRINTS DnaJ domain signature 32 47 IPR001623 -
Seca5g00333 149 FunFam Chaperone protein DNAj, putative 4 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00333 Seca-Chr5 7137619 7141710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00333 3 74 C2H2 Transcription Factor Family AT1G74250 41.558 8.05e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00333 - - gmx:100305987 211.46