Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00325 ATGCCGAGCAGCTCACAGGTTATTACATGCAAAGCTGCAATATGTTGGGGGTTAGGGAAGCCTGTGATGGTGGAAGAGATACAAGTAGACCCTCCAAAAGCAACCGAAGTTCGAGTTAAGATGCTCTGTGCCAGTATTTGCCACACAGACATCTCAAGCATTCAAGGAACTAATTTGCAGGCTAATTTTCCTCTGGCACTTGGACATGAAGGGGTTGGTGTTATAGAGAGTGTTGGTGATCAAGTGAAAAATCTAAAAGAAGGGGATATGATAATTCCAACATACATAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATTTGTGTCTGACATACCCTATAAGAGTGACTGGCCTAATGCCAGATAACACTTCAAGGATGTCTGTCCGAGGCCAAAGGCTACACCATGTCTTCAGTTGTGCTACATGGTCAGAATACATGGTTACTGATGCTAACTACCTTTTCAAAATTGATCCAAGCATTGATCCAGCCTATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTCTTGGAGCTGCTTGGAAGGAAGCTAAGGTTGAAAGTGGGTCAAGTGTAGCTGTTTTTGGTCTTGGAGCTGTTGGATTAGGGGCTATATGTGCAGCCAAGATGATGGGAGCAACTAGGATAATTGGAATTGACATAAATGAGATGAAGAGAGGAAAAGGAGAAGCTTTTGGCATGACTGACTTTATAAATCCTGGTGATTCTGTTAAATCTGCTTCACAATTGGTCAAGGAAATGAGTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTGCCCCTTTACTCACTCAATCTGTGGAAACCACAAAAGTGGGAACAGGAAAAACAATAGCAGTTGGTGCTGGAACTGAACCTATTGTGCCATTTGGACATTCTGCCATTCTGTATGGAAGAACTCTGAAAGGCTCTATTTTTGGAGGGTTAAAACCAAAATCAGACCTTTCCATTGTAGCTAACAGATGTCAGAATGGGGATTTCCCTCTTGGAGAAATATTCACCCATGAGGTCCCATTGGCAGATATAAGCAAAGCATTTGAGCTATTGAAACAACCCAATTGTGTGAAAGTTGTCATCAAGATGTGA 1128 0.4238 MPSSSQVITCKAAICWGLGKPVMVEEIQVDPPKATEVRVKMLCASICHTDISSIQGTNLQANFPLALGHEGVGVIESVGDQVKNLKEGDMIIPTYIGECQECENCVSGKTNLCLTYPIRVTGLMPDNTSRMSVRGQRLHHVFSCATWSEYMVTDANYLFKIDPSIDPAYASFISCGFSTGLGAAWKEAKVESGSSVAVFGLGAVGLGAICAAKMMGATRIIGIDINEMKRGKGEAFGMTDFINPGDSVKSASQLVKEMSGGMGVDYSFECTGVAPLLTQSVETTKVGTGKTIAVGAGTEPIVPFGHSAILYGRTLKGSIFGGLKPKSDLSIVANRCQNGDFPLGEIFTHEVPLADISKAFELLKQPNCVKVVIKM. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00325 375 Gene3D - 14 370 - -
Seca5g00325 375 PANTHER ALCOHOL DEHYDROGENASE 6 367 - -
Seca5g00325 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Seca5g00325 375 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 318 - -
Seca5g00325 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 339 IPR036291 -
Seca5g00325 375 Pfam Alcohol dehydrogenase GroES-like domain 35 161 IPR013154 -
Seca5g00325 375 Pfam Zinc-binding dehydrogenase 203 322 IPR013149 -
Seca5g00325 375 Gene3D - 180 318 - -
Seca5g00325 375 CDD liver_alcohol_DH_like 8 374 - -
Seca5g00325 375 FunFam alcohol dehydrogenase 1-like isoform X1 18 179 - -
Seca5g00325 375 SUPERFAMILY GroES-like 4 191 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00325 Seca-Chr5 6992760 6995541 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00325 35 367 Monolignol Biosynthesis Gene Families AT2G21730 25.893 5.55e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00325 K00121 - gmx:100798341 637.876