Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00323 ATGTCGAGCACATCACAGGTTATTACATGCAAAGCTGCAATATGTTGGGGGTTAGGGAAGGCTGTGACGGTGGAAGAGATACAAGTAGACCCTCCAAAAGCAACAGAAGTTCGAGTTAAGATGCTCTGTGCCAGTGTCTGCCACACAGACCTCTCAAGCATTCAAGGATTCCCACATCCAAATTTTCCTATGGCACTTGGACATGAAGGAGTTGGTGTTGTAGAGAGTGTTGGTGATCAAGTGAAAAATCTAAAAGAAGGGGATATGATAATTCCAACATACATAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGGAAAAACCAATTTGTGTCTGACATATCCTATAAGAGTGACTGGCCTAATGCCAGATAACACTTCAAGGATGTCTATCCGAGGTCAGAGGCTACACCATGTCTTAAGTTGTGCTACATGGTCAGAGTACATGGTTACTGATGCTAACTACCTTCTCAAAGTTGATTCAAGCATTGATCCAGCCCATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTTTTGGAGCTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGATCAAGTGTAGCTGTTTTTGGTCTTGGGGCTGTTGGATTAGGGGCTATAAGTGGAGCCAAGATGATGGGAGCAACTAGGATAATTGGAATTGATAAAAATGAGATGAAGAGAGAAAAAGGAGAAGCTTTTGGAATGACTGAATTTATAAATCCTGGTGATTCTGTTAAATCTGTTTCACAATTGGTCAAGGATGTGAGTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTGCCCCTTTACTTACTGAATCCTTGGAAGCCACAAAAGTGGGAACAGGTAAAACAATAGCAATTGGTTCAGGAACTGAACCTATTGTGCCCTTTGGTCTTGCTGCAATTCTATATGGCAGAACTTTGAAAGGTTCTGTTTTTGGAGGGCTAAAAGCCTTATCAGACCTTTCCATCATAGCTAACAAGTGTCAAAAAGAGGAATTTCCACTTCAAGAACTATTCACCCATGAGGTCCCATTGGAAGATATAAAGAAAGCATTTGAGCTATTAAAACAACCCAGTTGTGTGAAAATTGTTATCAAGATGTGA 1125 0.4151 MSSTSQVITCKAAICWGLGKAVTVEEIQVDPPKATEVRVKMLCASVCHTDLSSIQGFPHPNFPMALGHEGVGVVESVGDQVKNLKEGDMIIPTYIGECQECENCVSGKTNLCLTYPIRVTGLMPDNTSRMSIRGQRLHHVLSCATWSEYMVTDANYLLKVDSSIDPAHASFISCGFSTGFGAAWKEAKVESGSSVAVFGLGAVGLGAISGAKMMGATRIIGIDKNEMKREKGEAFGMTEFINPGDSVKSVSQLVKDVSGGMGVDYSFECTGVAPLLTESLEATKVGTGKTIAIGSGTEPIVPFGLAAILYGRTLKGSVFGGLKALSDLSIIANKCQKEEFPLQELFTHEVPLEDIKKAFELLKQPSCVKIVIKM. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00323 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Seca5g00323 374 SUPERFAMILY GroES-like 4 190 IPR011032 -
Seca5g00323 374 PANTHER ALCOHOL DEHYDROGENASE 6 366 - -
Seca5g00323 374 CDD liver_alcohol_DH_like 8 373 - -
Seca5g00323 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Seca5g00323 374 FunFam alcohol dehydrogenase 1-like isoform X1 18 178 - -
Seca5g00323 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 333 IPR036291 -
Seca5g00323 374 Gene3D - 179 317 - -
Seca5g00323 374 Pfam Zinc-binding dehydrogenase 202 321 IPR013149 -
Seca5g00323 374 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Seca5g00323 374 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Seca5g00323 374 Gene3D - 14 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00323 Seca-Chr5 6896821 6899507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00323 35 328 Monolignol Biosynthesis Gene Families AT2G21730 26.936 3.51e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00323 K00121 - gmx:100798341 662.144