Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00320 ATGCATGACCATCAAAAGAAAGGTTTTCAATTTATTTGGAAGAATATTGCAGGGTCAATACAACCAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACATTTCTTGTTATTGCCTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTGCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCCGTGTATCTAATTCATGGTCGTAAAAACCTGAGAAATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAAAGAATTCAAAGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTATAGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTAAGAACATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGAAACGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAACTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCCTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTACACCTATGAAGCTTTTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTGATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAGGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCCGGCCAGGAAAAGATGGTTTATGTGTATCAAATCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACTCTTCCCAATGGCAAGCAGAGAAGATTGAAGATGATATACTAAGAGAAATAGTTGAGAATGACGAGTCTAAAGCAATCCATATGATCATGAATAATGAAAAAGCTTCAAAAAACTAA 1746 0.3809 MHDHQKKGFQFIWKNIAGSIQPTLMEVESERRGGCVISHTPGAGKTFLVIAFIVSYLKLFPDKKPLILAAKTTLYTWYKEFIKWEIPIPVYLIHGRKNLRNFDETPLTIPGVPNPTSDFKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRKNSKYEHKKYMAKALRESIGILILDEGHNPRSTRSRLRKGLMKVETELRTLLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLEKRARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSASKFYTSQELNQLEKFKSDFKVGSKVRFILSPIFRVVKEEKVLIFCRNLTPMKLLVQLFEEFFKWKKGGEILLLDGEQDLFERGKVIDRFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQILAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENSSQWQAEKIEDDILREIVENDESKAIHMIMNNEKASKN. 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00320 581 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 579 IPR044567 GO:0080188
Seca5g00320 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 552 IPR001650 -
Seca5g00320 581 SMART helicmild6 412 501 IPR001650 -
Seca5g00320 581 Pfam SNF2-related domain 28 329 IPR000330 GO:0005524|GO:0140658
Seca5g00320 581 Gene3D - 1 266 IPR038718 -
Seca5g00320 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 227 IPR027417 -
Seca5g00320 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 565 IPR027417 -
Seca5g00320 581 Gene3D - 304 581 IPR027417 -
Seca5g00320 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 225 IPR014001 -
Seca5g00320 581 CDD SF2_C_SNF 376 509 - -
Seca5g00320 581 SMART ultradead3 8 237 IPR014001 -
Seca5g00320 581 Pfam Helicase conserved C-terminal domain 394 500 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00320 Seca-Chr5 6759675 6764667 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00320 427 519 RAD5 or RAD16-like Gene Family AT5G05130 41.489 8.56e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00320 SNF2_N 1.8e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00320 K10875 - gmx:100811703 854.358