Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00319 ATGGAAGAAACAAAGGATACAAATGCTTTAGCTCCAACTGAGGTAGATTCTAAAAAAGCATGTGAACGTGATACAAGATTGGATGAAGAAATTGGAATCTATGGCCTTAAATGTGGCGATGTGATCACAGAGATAAGAGATGTCATGGGACCCTTTGTACAACCACGCCGAGGAAGGCGCTACCAAGAGAAGGAGCAATACAATGGATATTCCAAGCCTGAGGTCAAGCCAAAGGATAAGGATAAGGAAGATAATGATTCTCGTGCTATTACAATTAATACTTATCATTATGATCCTTTATCTAAAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGTTGGAAAAACCTTTCTTGTTATTGCCTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAAAGAATTCAAAGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTACAGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAAAACTAAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACATGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGAATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAAGGCTCAATGGAGGAAGATAA 1749 0.3831 MEETKDTNALAPTEVDSKKACERDTRLDEEIGIYGLKCGDVITEIRDVMGPFVQPRRGRRYQEKEQYNGYSKPEVKPKDKDKEDNDSRAITINTYHYDPLSKENDNVWSLIPELSKKMHDHQKGFQFIWQNIAGSIQPTLMEVESERRGGCVISHTPGVGKTFLVIAFIVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDFKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRKNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETKLRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLETCARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMEEKVLIFCRNLAPMKLLVQLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKRLNGGR. 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00319 582 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g00319 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 577 IPR027417 -
Seca5g00319 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 343 IPR027417 -
Seca5g00319 582 Gene3D - 86 378 IPR038718 -
Seca5g00319 582 SMART ultradead3 114 353 IPR014001 -
Seca5g00319 582 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 9 445 IPR044567 GO:0080188
Seca5g00319 582 SMART helicmild6 474 563 IPR001650 -
Seca5g00319 582 CDD SF2_C_SNF 461 574 - -
Seca5g00319 582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 453 582 IPR001650 -
Seca5g00319 582 MobiDBLite consensus disorder prediction 57 87 - -
Seca5g00319 582 Gene3D - 430 578 IPR027417 -
Seca5g00319 582 Pfam SNF2-related domain 129 445 IPR000330 GO:0005524|GO:0140658
Seca5g00319 582 MobiDBLite consensus disorder prediction 56 87 - -
Seca5g00319 582 Pfam Helicase conserved C-terminal domain 457 562 IPR001650 -
Seca5g00319 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 341 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00319 Seca-Chr5 6724371 6726537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00319 489 576 RAD5 or RAD16-like Gene Family AT5G05130 39.326 2.33e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00319 SNF2_N 9.9e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00319 K10875 - gmx:100811703 687.182