Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00318 ATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAATAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGAGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCAAAGATAAAGCAGGCTATTGCAAGGGCATTTCGTCCTGGCCAGGAAAAGATGGTTTGTGTGTGTCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTTAGTGAGGATTTTGTGGAGAACTCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAGTCTAAGGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 720 0.3986 MVTLGSIHPWLIKTAISASKFYTSQELNQLEKFKSDFKVGSKERFILSLIFRVVKEEKVLIFCRNLAPMKLLVQLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVCVCQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENSSQWQAEKIEDDILREIVENDESKAIHMIMKNEKASKN. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00318 239 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 45 210 IPR001650 -
Seca5g00318 239 SMART helicmild6 70 159 IPR001650 -
Seca5g00318 239 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 238 IPR044567 GO:0080188
Seca5g00318 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 223 IPR027417 -
Seca5g00318 239 Pfam Helicase conserved C-terminal domain 44 158 IPR001650 -
Seca5g00318 239 CDD SF2_C_SNF 34 166 - -
Seca5g00318 239 Gene3D - 5 239 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00318 Seca-Chr5 6697386 6698105 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00318 85 177 RAD5 or RAD16-like Gene Family AT5G05130 40.426 5.30e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00318 K10875 - gmx:100781856 357.836