Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00316 ATGGAAGTAGAATCTGAAAGAAGAAGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAAAGAATTCAAGGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTACAGGGATCCTTATACTTGATGAAGGGCATAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTAAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGAAAGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGCTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCATGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGAAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAATTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGAAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACTCTTCCTAG 1566 0.387 MEVESERRSGCVISHTPGAGKTFLVIAFIVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDFKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRKNSRYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLETRARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMAGSSVFPLEGELMVTHGSIHPWLIKTATSASKFYTSQELNQLEKFKSDFKEGSKVRFILSLIFRVVKEEKVLIFCRNLAPMKLLVQLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLEKGSMEEDKYRRTTWKEWVSNMIFSEDFVENSS. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00316 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 203 IPR027417 -
Seca5g00316 521 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 519 IPR044567 GO:0080188
Seca5g00316 521 CDD SF2_C_SNF 352 488 - -
Seca5g00316 521 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 201 IPR014001 -
Seca5g00316 521 Pfam Helicase conserved C-terminal domain 360 476 IPR001650 -
Seca5g00316 521 SMART ultradead3 2 213 IPR014001 -
Seca5g00316 521 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 521 IPR001650 -
Seca5g00316 521 SMART helicmild6 388 477 IPR001650 -
Seca5g00316 521 Pfam SNF2-related domain 7 305 IPR000330 GO:0005524|GO:0140658
Seca5g00316 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 514 IPR027417 -
Seca5g00316 521 Gene3D - 1 241 IPR038718 -
Seca5g00316 521 Gene3D - 280 521 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00316 Seca-Chr5 6657501 6659066 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00316 403 495 RAD5 or RAD16-like Gene Family AT5G05130 39.362 1.57e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00316 SNF2_N 1.7e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00316 K10875 - gmx:100811703 766.918