Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00315 ATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCGTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCATAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTATTCCTAGATGACATTGCTAAGAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAACTTCCTGGTTTGCAAATTTATACTTTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGCTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTACCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAATCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACGGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAAGAAGATAATGGCAAGCAGAGAAGATTGAAGATGATATACTAA 1314 0.3836 MEVESERRGGCVISHTPGAGKTFLVIAFIVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHGHKNLRDFDETPLTIPGVPNPTSDFKHVLDCLEKIKKWHLHPSVLNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLETRARKLFLDDIAKKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMAGSSVFPLEGELMVTLGSIHPWLIKTATSANKFYTSQELNQLEKFKSDFKVGSKVRFILSLTFRVVKEEKVLIFCRNLAPMNLLVQLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDNGKQRRLKMIY. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00315 437 SMART helicmild6 318 407 IPR001650 -
Seca5g00315 437 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 116 431 IPR044567 GO:0080188
Seca5g00315 437 CDD SF2_C_SNF 282 418 - -
Seca5g00315 437 Pfam SNF2-related domain 8 75 IPR000330 GO:0005524|GO:0140658
Seca5g00315 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 427 IPR027417 -
Seca5g00315 437 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 437 IPR001650 -
Seca5g00315 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 77 IPR027417 -
Seca5g00315 437 Gene3D - 210 436 IPR027417 -
Seca5g00315 437 Gene3D - 1 85 IPR038718 -
Seca5g00315 437 Pfam Helicase conserved C-terminal domain 290 406 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00315 Seca-Chr5 6631429 6633028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00315 333 425 RAD5 or RAD16-like Gene Family AT5G05130 40.426 2.41e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00315 Helicase_C 2.3e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00315 K10875 - vvi:100250037 435.647