Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00314 ATGAAAGTAGAGACAGAACTAAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGGAGGAAAATGATAAAAATGCAGAGAAAGCACAACATTTACTTGAGATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTATAGTACAGTTGTTTAAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTATTTGCTTTAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGTAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACTCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1074 0.3827 MKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKEENDKNAEKAQHLLEITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSASKFYTSQELNQLEKFKSDFKVGSKVRFILSLIFRVVKEEKVLIFCRNLAPMKLIVQLFKEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLFALITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENSSQWQAEKIEDDILREIVENDESKAIHMIMKNEKASKN. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00314 357 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 163 328 IPR001650 -
Seca5g00314 357 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 355 IPR044567 GO:0080188
Seca5g00314 357 Pfam Helicase conserved C-terminal domain 160 276 IPR001650 -
Seca5g00314 357 SMART helicmild6 188 277 IPR001650 -
Seca5g00314 357 Gene3D - 1 69 IPR038718 -
Seca5g00314 357 CDD SF2_C_SNF 152 288 - -
Seca5g00314 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 341 IPR027417 -
Seca5g00314 357 Gene3D - 80 357 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00314 Seca-Chr5 6608407 6609571 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00314 203 295 RAD5 or RAD16-like Gene Family AT5G05130 38.298 2.79e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00314 K10875 - gmx:100811703 496.893