Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00311 ATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAAAGAATTCAAAGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTACAGGGATCCTTATACTTGATGAAGGGCACAATCCTAGAAGCACCAGGCCAAAGTTTGTTCAAGAAGTTCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGACGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTAGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAATAGCAACAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGCGGAGTTTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAATGGCAAGCAGAGAAGATCGAAGATGATATACTAA 1410 0.3879 MEVESERRGGCVISHTPGAGKTFLVIAFIVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDFKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRKNSKYEHKKYMAKALRESTGILILDEGHNPRSTRPKFVQEVLKELDIKQKKENDKNPEKAQHLLETRARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKIATSASKFYTSQELNQLEKFKSDFKVGSKVRFILSLIFRVVKEEKVLIFCRNLAPMKLLVQLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDNGKQRRSKMIY. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00311 469 Gene3D - 1 178 IPR038718 -
Seca5g00311 469 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 161 466 IPR044567 GO:0080188
Seca5g00311 469 Pfam Helicase conserved C-terminal domain 322 438 IPR001650 -
Seca5g00311 469 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 469 IPR001650 -
Seca5g00311 469 CDD SF2_C_SNF 314 450 - -
Seca5g00311 469 Pfam SNF2-related domain 8 175 IPR000330 GO:0005524|GO:0140658
Seca5g00311 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 465 IPR027417 -
Seca5g00311 469 Gene3D - 242 468 IPR027417 -
Seca5g00311 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 164 IPR027417 -
Seca5g00311 469 SMART helicmild6 350 439 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00311 Seca-Chr5 6581592 6583191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00311 365 457 RAD5 or RAD16-like Gene Family AT5G05130 40.426 2.91e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00311 SNF2_N 2.8e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00311 K10875 - gmx:100811703 648.277