Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00309 ATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAAAGAATTCAAAGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTACAGGGATCCTTATACTTGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTAAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAATAAAATGGCTGGGTCCAGCGTGTTCCCTTTAGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCGTGGTTGATCAAAACAGCAACAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCTTGCGGAGTTTCAAAGGTACTACTTGCTTGA 1314 0.3828 MEVESERRGGCVISHTPGAGKTFLVIAFIVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDFKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRKNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLETRARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQNKMAGSSVFPLEGELMVTLGSIHPWLIKTATSASKFYTSQELNQLEKFKSDFKVGSKVRFILSLIFRVVKEEKVLIFCRNLAPMKLLVQLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLA. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00309 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 203 IPR027417 -
Seca5g00309 437 Gene3D - 1 241 IPR038718 -
Seca5g00309 437 SMART ultradead3 2 213 IPR014001 -
Seca5g00309 437 Gene3D - 280 437 IPR027417 -
Seca5g00309 437 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 437 IPR044567 GO:0080188
Seca5g00309 437 Pfam SNF2-related domain 8 302 IPR000330 GO:0005524|GO:0140658
Seca5g00309 437 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 201 IPR014001 -
Seca5g00309 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00309 Seca-Chr5 6555991 6557304 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00309 SNF2_N 2.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00309 K10875 - gmx:100811703 632.484