Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00308 ATGAGAAGACATTATTATTCATCGTCTTTAAGAAGAGATAGAAGTGATGATGATGATGATGAAGAGCTACCTCGGAGAAGCAACAAGTTGAATACAACTGCATATAATGAAATGATAGATTCATATATGAAAGATATTGATAATAAGCTAGCTATAGAAAAGCCACCCTCGCCCATTGCTAAGCAGCAAAATAAGGAAGTAGAAATCATAAGCACTTCTAAACAAAATAAGGAAGTGGAAACACCTCAAGAAATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAATGTCTGAGACGGATATGTTGTGGAGAGAAATGGATGATGCAATGACAGAAATTTATCTTATGGAAGAAACAAAGGATTCAAATGCTTTAGCTCCAACTGAGGTAGATTCTAAAAAAGCATGTGAACATGATACAAGATTAGATGAAGAAATTGGAATCTATTGCCTTAAATGTGGCGATGTGATCACAGAGATAAGAGATGTCATGGGACCCTTTTTAAGTCAAACTCAAAACTCTCTCTCTATGTTGGTACAACCACGTCGAGGAAGGCGCTACCAAGAGAAGGAGCAATACAATGGATATTCCAAGCCCGAGCTCGAGCCAAAGGATAAGGATAACGAAGATAATGATTCTCGTGCTATTACAATTAATACTTATCATTATGATCCTTTATCTAAAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAAAGAATTCAAAGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTACAGGGATCCTTATACTTGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTAAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGCTGGGTCCAGCGTGTTCCCTTTAGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACGGCAACAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTTTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTGTTACTTTATGGGGAACAAGACCTGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACTCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAGTCTAAAGCAATCCATTTGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 2391 0.3814 MRRHYYSSSLRRDRSDDDDDEELPRRSNKLNTTAYNEMIDSYMKDIDNKLAIEKPPSPIAKQQNKEVEIISTSKQNKEVETPQEIEEEEEEEEEEEEMSETDMLWREMDDAMTEIYLMEETKDSNALAPTEVDSKKACEHDTRLDEEIGIYCLKCGDVITEIRDVMGPFLSQTQNSLSMLVQPRRGRRYQEKEQYNGYSKPELEPKDKDNEDNDSRAITINTYHYDPLSKENDNVWSLIPELSKKMHDHQKKGFQFIWQNIAGSIQPTLMEVESERRGGCVISHTPGAGKTFLVIAFIVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDFKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRKNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLETRARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMAGSSVFPLEGELMVTLGSIHPWLIKTATSASKFYTSQELNQLEKFKSDFKVGSKVRFILSLIFRVFKEEKVLIFCRNLAPMKLLVQLFEEFFKWKKGGEICYFMGNKTCISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENSSQWQAEKIEDDILREIVENDESKAIHLIMKNEKASKN. 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00308 796 MobiDBLite consensus disorder prediction 181 214 - -
Seca5g00308 796 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 271 470 IPR014001 -
Seca5g00308 796 MobiDBLite consensus disorder prediction 1 32 - -
Seca5g00308 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 757 IPR027417 -
Seca5g00308 796 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 13 681 IPR044567 GO:0080188
Seca5g00308 796 MobiDBLite consensus disorder prediction 82 101 - -
Seca5g00308 796 MobiDBLite consensus disorder prediction 185 214 - -
Seca5g00308 796 Pfam SNF2-related domain 256 574 IPR000330 GO:0005524|GO:0140658
Seca5g00308 796 SMART ultradead3 242 482 IPR014001 -
Seca5g00308 796 Gene3D - 681 796 IPR027417 -
Seca5g00308 796 Gene3D - 216 510 IPR038718 -
Seca5g00308 796 MobiDBLite consensus disorder prediction 54 101 - -
Seca5g00308 796 CDD SF2_C_SNF 621 727 - -
Seca5g00308 796 MobiDBLite consensus disorder prediction 8 27 - -
Seca5g00308 796 MobiDBLite consensus disorder prediction 64 78 - -
Seca5g00308 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 472 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00308 Seca-Chr5 6528466 6531194 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00308 661 734 RAD5 or RAD16-like Gene Family AT5G05130 36.364 5.96e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00308 SNF2_N 1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00308 K10875 - gmx:100811703 915.605