Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00307 ATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTATTGTTAGCTACTTAAAGTTATTCCGAGCACTAACGAGAAAGAATTCAAAGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTACAGGGATCCTTATACTTGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTAAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTTCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGCTGGGTCCAGCGTGTTCCCTTTAGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAACAACAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGCGGAGTTTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTTGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGTAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACTCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1416 0.387 MEVESERRGGCVISHTPGAGKTFLVIAFIVSYLKLFRALTRKNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLETRARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMAGSSVFPLEGELMVTLGSIHPWLIKTTTSASKFYTSQELNQLEKFKSDFKVGSKVRFILSLIFRVVKEEKVLIFCRNLAPMKLLVQLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFCPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENSSQWQAEKIEDDILREIVENDESKAIHMIMKNEKASKN. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00307 471 Gene3D - 194 471 IPR027417 -
Seca5g00307 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 455 IPR027417 -
Seca5g00307 471 Pfam Helicase conserved C-terminal domain 274 387 IPR001650 -
Seca5g00307 471 CDD SF2_C_SNF 266 402 - -
Seca5g00307 471 Gene3D - 39 154 IPR038718 -
Seca5g00307 471 Pfam SNF2-related domain 47 219 IPR000330 GO:0005524|GO:0140658
Seca5g00307 471 SMART helicmild6 302 391 IPR001650 -
Seca5g00307 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 117 IPR027417 -
Seca5g00307 471 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 34 469 IPR044567 GO:0080188
Seca5g00307 471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 442 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00307 Seca-Chr5 6494166 6495839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00307 317 409 RAD5 or RAD16-like Gene Family AT5G05130 39.362 3.95e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00307 SNF2_N 1.2e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00307 K10875 - jre:108991882 624.009