Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00306 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAAAAGAATTCAAAGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTACAGGGATCCTTATACTTGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTAAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGCTGGGTCCAGCGTGTTCCCTTTGGAAACGGCAACAAGTGCGAGTAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGCGGAGTTTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTAGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACTCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAGTCTAAAGCAATCCATTTGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1527 0.3811 MHDHQKKGFQFIWQNIAGSIQPTLMEVESERRGGCVISHTPGAGKTFLVIAFIVSYLKLFPDKKPLILAPKTTLYTWYKEFIKPLTIPGVPNPTSDFKHVLDCLEKIKKKNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLETRARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMAGSSVFPLETATSASKFYTSQELNQLEKFKSDFKVGSKVRFILSLIFRVVKEEKVLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITTCAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENSSQWQAEKIEDDILREIVENDESKAIHLIMKNEKASKN. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00306 508 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 106 506 IPR044567 GO:0080188
Seca5g00306 508 SMART helicmild6 343 428 IPR001650 -
Seca5g00306 508 Pfam Helicase conserved C-terminal domain 342 427 IPR001650 -
Seca5g00306 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 479 IPR001650 -
Seca5g00306 508 Pfam SNF2-related domain 27 300 IPR000330 GO:0005524|GO:0140658
Seca5g00306 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 185 IPR027417 -
Seca5g00306 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 183 IPR014001 -
Seca5g00306 508 CDD SF2_C_SNF 318 439 - -
Seca5g00306 508 Gene3D - 1 222 IPR038718 -
Seca5g00306 508 Gene3D - 325 504 IPR027417 -
Seca5g00306 508 SMART ultradead3 1 195 IPR014001 -
Seca5g00306 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 493 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00306 Seca-Chr5 6456732 6458477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00306 332 446 RAD5 or RAD16-like Gene Family AT5G05130 37.069 7.04e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00306 SNF2_N 5.1e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00306 K10875 - gmx:100811703 694.886