Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00305 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTAGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTACCTTTATTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTAGTGATTTTAAACATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAAAGAATTCAAAGTACGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGTACAGGGATCCTTATACTTGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTAAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGACATAAAACAAAAGAAGGAAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTATTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGGGAGTGGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTTCAGAATGAGCTTTTACAGAAATTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGAGTAAGTTTTACACTTCACAGAAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTGAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTCTAGTACAGTTGTTTGAGGAGTTCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCAAGTGGAGTTTCAAAGGTACTACTTGATTCAATTACAACTTGTGCTGAAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACTCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1644 0.3783 MHDHQKKGFQFIWQNIAGSIQPTLMEVESERRGGSVISHTPGAGKTFLVITFIVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDFKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRKNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKENDKNPEKAQHLLETRARKLFLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYGSGNSDKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSASKFYTSQKLNQLEKFKSDLKVGSKVRFILSLIFRVVKEEKVLIFCRNLAPMKLLVQLFEEFFKWKKGGEILLLYGEQDLFERGKVIDKFEDPSGVSKVLLDSITTCAEGKDGLCVSTLGKRLMEEDKYRRTTWKEWVSNMIFSEDFVENSSQWQAEKIEDDILREIVENDESKAIHMIMKNEKASKN. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00305 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 531 IPR027417 -
Seca5g00305 547 Pfam SNF2-related domain 16 329 IPR000330 GO:0005524|GO:0140658
Seca5g00305 547 SMART ultradead3 1 237 IPR014001 -
Seca5g00305 547 Gene3D - 304 478 IPR027417 -
Seca5g00305 547 Gene3D - 1 265 IPR038718 -
Seca5g00305 547 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 469 IPR044567 GO:0080188
Seca5g00305 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 227 IPR027417 -
Seca5g00305 547 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 225 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00305 Seca-Chr5 6422375 6424119 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g00305 SNF2_N 9.6e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00305 K10875 - gmx:100811703 765.763