Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g00300 ATGTACACTTCTAGGAAGAAAATCCTCAAGGATAAGGATGTCGAGCCAACTGAATTTGAGGATACAGTTGCACAGTACTTATTTGACTTGGAGAACACCAATCAGGATCTCAAAAGTGACTTGAAAGATCTCTATATAAACCAAGCAATTCAAATGGATGTAGCTGGGAATAGCAAGGCTGTAGTCATCTATGTGCCTTACAGATTGAGGAAGGGATTCCACAAAATTCATCTTCGACTTGTCAGGGAGTTGGAGAAGAAGTTTAGTGGAAAGGATGTTGTCTTGATTGCCACAAGAAGGATCCTGCGTCCACCAAAGAAAGGCTCTGCTGTTCAGCGGCCACGAACTCGCACATTGACTGCTGTCCATGATGCCATGCTGGAGGATGTTGTGCATCCTGCAGAGATTGTTGGCAAAAGGATCAGATATCGACTTGATGGGTCAAAAATAATCAAGGTAGTTTTCTTGGACCCTAAGGAGTGCAATAACACTGAGTACAAGCTGGAGACTTTTTCTGTAGTTTACAGGAAACTTACCGGAAAAGATGTAGTATTTGAGTATCCGATCACAGAAGCATGA 579 0.4249 MYTSRKKILKDKDVEPTEFEDTVAQYLFDLENTNQDLKSDLKDLYINQAIQMDVAGNSKAVVIYVPYRLRKGFHKIHLRLVRELEKKFSGKDVVLIATRRILRPPKKGSAVQRPRTRTLTAVHDAMLEDVVHPAEIVGKRIRYRLDGSKIIKVVFLDPKECNNTEYKLETFSVVYRKLTGKDVVFEYPITEA. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g00300 192 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca5g00300 192 Coils Coil 27 47 - -
Seca5g00300 192 PANTHER 40S RIBOSOMAL PROTEIN S7 1 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca5g00300 192 Pfam Ribosomal protein S7e 7 187 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g00300 Seca-Chr5 6206515 6209511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g00300 1 192 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 78.125 3.12e-109 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g00300 K02993 - gmx:100500684 343.969